Refactor: Logging, Module Restructure, and Codebase Streamlining#4

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lllangWV merged 6 commits intomainfrom

May 9, 2025

Commits on May 9, 2025

refactor(logging): Refactor how the package handles logging and configurations
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chore: Remove calculations module and its associated files
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chore: Remove graph_kit module and its associated files
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refactor: Update import paths and restructure edge and node generators
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refactor(logging): Replace verbosity setting function with new logging utility
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chore: Update material_0.parquet test data file
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