Skip to content

x1511 new bio states used in visium transfer #630

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
khelwood merged 1 commit into from
Mar 26, 2026
Merged

x1511 new bio states used in visium transfer #630

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 3 additions & 9 deletions src/main/java/uk/ac/sanger/sccp/stan/service/SlotCopyServiceImp.java
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,16 +32,10 @@ public class SlotCopyServiceImp implements SlotCopyService {
static final String LP_NOTE_NAME = "LP number";
static final String CASSETTE_LOT_NOTE_NAME = "cassette lot";

static final String BS_PROBES = "Probes", BS_CDNA = "cDNA", BS_LIBRARY = "Library",
BS_LIB_PRE_CLEAN = "Library pre-clean", BS_LIB_POST_CLEAN = "Library post-clean",
BS_PROBES_PRE_CLEAN = "Probes pre-clean", BS_PROBES_POST_CLEAN = "Probes post-clean",
BS_LIB_POST_CLEAN_1_20 = "Library post-clean 1:20 dilution",
BS_CDNA_PRE_CLEAN = "cDNA pre-clean", BS_CDNA_POST_CLEAN = "cDNA post-clean";

static final Set<String> VALID_BS_UPPER = Stream.of(
BS_PROBES, BS_CDNA, BS_LIBRARY, BS_LIB_PRE_CLEAN, BS_LIB_POST_CLEAN,
BS_PROBES_PRE_CLEAN, BS_PROBES_POST_CLEAN, BS_LIB_POST_CLEAN_1_20,
BS_CDNA_PRE_CLEAN, BS_CDNA_POST_CLEAN
"Probes", "cDNA", "Library", "Library pre-clean", "Library post-clean",
"Probes pre-clean", "Probes post-clean", "Library post-clean 1:20 dilution",
"cDNA pre-clean", "cDNA post-clean", "cDNA fragmentation", "cDNA adaptor ligation", "Poly(A) RNA"
).map(String::toUpperCase)
.collect(toSet());

Expand Down
Loading