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Improve diagnostic messages for er10101, er10102, er10103, er10104, er10106, er10107, er10109 #78

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Improve diagnostic messages for er10101, er10102, er10103, er10104, er10106, er10107, er10109 #78

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16 changes: 8 additions & 8 deletions validation/rules/sbgn_er.sch
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Original file line number Diff line number Diff line change
Expand Up @@ -93,7 +93,7 @@ Schematron validation for SBGN ER
test="
$class='variable value' or
$class='implicit xor'"
diagnostics="source class">Incorrect source reference for arc with class "assignment"
diagnostics="source class">Arc has an incorrect source reference. The source glyph has a class which is not allowed as a source for an assignment arc. Please check the SBGN ER specification for allowed source classes.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -112,7 +112,7 @@ Schematron validation for SBGN ER
$target-class='existence' or
$target-class='location' or
$target-class='implicit xor'"
diagnostics="id target target-class">Incorrect target reference for arc with class "assignment"
diagnostics="id target target-class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for an assignment arc. Please check the SBGN ER specification for allowed target classes.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -132,7 +132,7 @@ Schematron validation for SBGN ER
$class='outcome' or
$class='unit of information' or
$class='interaction'"
diagnostics="id source class">Incorrect source reference for arc with class "interaction"
diagnostics="id source class">Arc has an incorrect source reference. The source glyph has a class which is not allowed as a source for an interaction arc. Source must be an entity or interaction glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -150,7 +150,7 @@ Schematron validation for SBGN ER
$target-class='entity' or
$target-class='outcome' or
$target-class='unit of information'"
diagnostics="id target target-class">Incorrect target reference for arc with class "interaction"
diagnostics="id target target-class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for an interaction arc. Target must be an entity or unit of information glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand Down Expand Up @@ -191,7 +191,7 @@ Schematron validation for SBGN ER
$port-class='not' or
$port-class='delay' or
$class='perturbing agent'"
diagnostics="id source port-class class">Incorrect source reference for influence arc
diagnostics="id source port-class class">Arc has an incorrect source reference. The source glyph has a class which is not allowed as a source for an influence arc. Source must be an entity or perturbing agent glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -215,7 +215,7 @@ Schematron validation for SBGN ER
$port-class='assignment' or
$port-class='interaction' or
$class='phenotype'"
diagnostics="id target port-class class">Incorrect target reference for influence arc
diagnostics="id target port-class class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for an influence arc. Target must be an interaction or phenotype glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand Down Expand Up @@ -252,7 +252,7 @@ Schematron validation for SBGN ER
$port-class='or' or
$port-class='not' or
$port-class='delay'"
diagnostics="id target port-class">Incorrect target reference for arc with class "logic arc"
diagnostics="id target port-class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for a logic arc. Target must be a logic operator or delay glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand Down Expand Up @@ -285,4 +285,4 @@ Schematron validation for SBGN ER
<iso:diagnostic id="port-id"><iso:value-of select="$port-id"/></iso:diagnostic>
<iso:diagnostic id="port-class"><iso:value-of select="$port-class"/></iso:diagnostic>
</iso:diagnostics>
</iso:schema>
</iso:schema>