Skip to content

Improve diagnostic messages for af10101, af10102, af10103, af10104, af10109, af10110, af10112, af10113 #79

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
Drishti160803 wants to merge 1 commit into
base: master
Choose a base branch
from
Open

Improve diagnostic messages for af10101, af10102, af10103, af10104, af10109, af10110, af10112, af10113 #79

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
18 changes: 9 additions & 9 deletions validation/rules/sbgn_af.sch
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -79,7 +79,7 @@ Schematron validation for SBGN AF
$port-class='or' or
$port-class='not' or
$port-class='delay'"
diagnostics="id source source-class port-class">Incorrect source reference for influence arc
diagnostics="id source source-class port-class">Arc has an incorrect source reference. The source glyph has a class which is not allowed as a source for a positive influence arc. Source must be an activity node or a delay glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -98,7 +98,7 @@ Schematron validation for SBGN AF
test="
$target-class='biological activity' or
$target-class='phenotype'"
diagnostics="id target target-class port-class">Incorrect target reference for influence arc
diagnostics="id target target-class port-class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for a positive influence arc. Target must be an activity node or phenotype.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -121,7 +121,7 @@ Schematron validation for SBGN AF
$class='necessary stimulation' or
$class='unknown influence'
"
diagnostics="id class">This arc class is not allowed in Activity Flow
diagnostics="id class">Arc has a class which is not permitted in an Activity Flow diagram. Please check the SBGN AF specification for the list of allowed arc classes.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand Down Expand Up @@ -149,7 +149,7 @@ Schematron validation for SBGN AF
$class='perturbation' or
$class='phenotype'
"
diagnostics="id class">This glyph class is not allowed in Activity Flow
diagnostics="id class">Glyph has a class which is not permitted in an Activity Flow diagram. Please check the SBGN AF specification for the list of allowed glyph classes.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -166,7 +166,7 @@ Schematron validation for SBGN AF
see="sbgn-af-L1V1.0-3.3.1"
test="
$source-class='biological activity'"
diagnostics="id source source-class">Incorrect source reference for arc with class "logic arc"
diagnostics="id source source-class">Arc has an incorrect source reference. The source glyph has a class which is not allowed as a source for a logic arc. Source must be a biological activity node or a logic operator.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -187,7 +187,7 @@ Schematron validation for SBGN AF
$port-class='or' or
$port-class='not' or
$port-class='delay'"
diagnostics="id target target-class port-class">Incorrect target reference for arc with class "logic arc"
diagnostics="id target target-class port-class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for a logic arc. Target must be a logic operator or delay glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand Down Expand Up @@ -222,7 +222,7 @@ Schematron validation for SBGN AF
test="
$source-class='biological activity' or
$source-class='compartment'"
diagnostics="id source source-class">Incorrect source reference for arc with class "equivalence arc"
diagnostics="id source source-class">Arc has an incorrect source reference. The source glyph has a class which is not allowed as a source for an equivalence arc. Source must be a biological activity or compartment glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand All @@ -240,7 +240,7 @@ Schematron validation for SBGN AF
$target-class='tag' or
$target-class='submap' or
$target-class='terminal'"
diagnostics="id target target-class">Incorrect target reference for arc with class "equivalence arc"
diagnostics="id target target-class">Arc has an incorrect target reference. The target glyph has a class which is not allowed as a target for an equivalence arc. Target must be a tag, submap, or terminal glyph.
</iso:assert>
</iso:rule>
</iso:pattern>
Expand Down Expand Up @@ -272,4 +272,4 @@ Schematron validation for SBGN AF
<iso:diagnostic id="arc-count"><iso:value-of select="$arc-count"/></iso:diagnostic>
<iso:diagnostic id="count"><iso:value-of select="$count"/></iso:diagnostic>
</iso:diagnostics>
</iso:schema>
</iso:schema>