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update containers #32

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Merged
cokelaer merged 2 commits into from
May 21, 2026
+4 −4
Merged

update containers #32

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98a1f66
Fix CI: update mamba-org/setup-micromamba to v2
cokelaer Apr 7, 2026
02f1787
update containers
cokelaer May 21, 2026
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2 changes: 1 addition & 1 deletion .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ jobs:
uses: actions/checkout@v4

- name: conda/mamba
uses: mamba-org/setup-micromamba@v1
uses: mamba-org/setup-micromamba@v2
with:
environment-file: environment.yml
create-args: >-
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6 changes: 3 additions & 3 deletions sequana_pipelines/mapper/config.yaml
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Expand Up @@ -23,14 +23,14 @@ apptainers:
bamtools: https://zenodo.org/record/10211475/files/bamtools_2.5.2.img
bowtie2: https://zenodo.org/record/8037162/files/sequana_minimal_23.6.13.img
bwa: https://zenodo.org/record/8037162/files/sequana_minimal_23.6.13.img
deeptools: https://zenodo.org/record/7341710/files/sequana_tools_0.14.5.img
deeptools: https://zenodo.org/record/18257162/files/sequana_tools_26.1.14.img
graphviz: https://zenodo.org/record/7928262/files/graphviz_7.0.5.img
minimap2: https://zenodo.org/record/7341710/files/sequana_tools_0.14.5.img
minimap2: https://zenodo.org/record/18257162/files/sequana_tools_26.1.14.img
multiqc: https://zenodo.org/record/10205070/files/multiqc_1.16.0.img
samtools: https://zenodo.org/record/7437898/files/samtools_1.16.1.img
sequana_coverage: https://zenodo.org/record/13946414/files/sequana_coverage_0.18.0.img
seqkit: https://zenodo.org/record/7821924/files/seqkit_2.4.0.img
subread: https://zenodo.org/record/7341710/files/sequana_tools_0.14.5.img
subread: https://zenodo.org/record/18257162/files/sequana_tools_26.1.14.img
mosdepth: https://zenodo.org/record/12805460/files/mosdepth_0.3.8.img


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