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[python] Document current update obs/var limitation#4449

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aaron/soma-949-document-update_obsupdate_var-limitation-after-cell-deletion
Apr 23, 2026
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[python] Document current update obs/var limitation#4449
aaronwolen merged 1 commit into
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aaron/soma-949-document-update_obsupdate_var-limitation-after-cell-deletion

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Issue and/or context: [SOMA-949]

Changes: Document that deletion creates gaps in soma_joinid values, which currently blocks updates via update_obs and update_var methods.

Notes for Reviewer: Fixes for these limitations are in progress.

- Document limitations of `update_obs` and `update_var` methods
- Note that deletion creates gaps in `soma_joinid` values
- Recommend using `DataFrame.write` as a workaround
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codecov Bot commented Apr 21, 2026

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 85.26%. Comparing base (1ba587f) to head (2f1bfa4).
⚠️ Report is 1 commits behind head on main.

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@@            Coverage Diff             @@
##             main    #4449      +/-   ##
==========================================
- Coverage   85.27%   85.26%   -0.01%     
==========================================
  Files         136      136              
  Lines       21263    21263              
==========================================
- Hits        18132    18130       -2     
- Misses       3131     3133       +2     
Flag Coverage Δ
python 88.42% <ø> (-0.03%) ⬇️

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Components Coverage Δ
python_api 88.42% <ø> (-0.03%) ⬇️
libtiledbsoma ∅ <ø> (∅)
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@aaronwolen aaronwolen requested review from jp-dark April 21, 2026 22:30
@aaronwolen aaronwolen marked this pull request as ready for review April 21, 2026 22:30
@aaronwolen aaronwolen merged commit 1542bb1 into main Apr 23, 2026
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@aaronwolen aaronwolen deleted the aaron/soma-949-document-update_obsupdate_var-limitation-after-cell-deletion branch April 23, 2026 20:23
jp-dark pushed a commit that referenced this pull request Apr 24, 2026
- Document limitations of `update_obs` and `update_var` methods
- Note that deletion creates gaps in `soma_joinid` values
- Recommend using `DataFrame.write` as a workaround

(cherry picked from commit 1542bb1)

Co-authored-by: Aaron Wolen <aaron@wolen.com>
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2 participants