Save vm arm

.github/actions/e2e-Setup-Composite/action.yml

@@ -47,10 +47,10 @@ runs:
           sudo chmod -R a+rwx /tmp/
           echo "This file is used to check if Submitty is being run in the Github Actions CI." > ${SUBMITTY_REPOSITORY}/.github_actions_ci_flag
       shell: bash
-    - uses: actions/setup-python@v5
+    - uses: actions/setup-python@v6
       with:
         python-version: ${{ env.PYTHON_VERSION }}
-    - uses: shivammathur/setup-php@2.35.4
+    - uses: shivammathur/setup-php@2.35.5
       with:
         php-version: ${{ env.PHP_VER }}
         extensions: imagick, ldap

.github/workflows/bump_repo.yml

@@ -9,7 +9,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v5
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: 3.11
       - name: Update version

.github/workflows/ci.yml

@@ -46,7 +46,7 @@ jobs:
         working-directory: site
     steps:
       - uses: actions/checkout@v5
-      - uses: actions/setup-node@v4
+      - uses: actions/setup-node@v5
         with:
           node-version: ${{ env.NODE_VERSION }}
       - name: Cache Node Modules
@@ -71,7 +71,7 @@ jobs:
         working-directory: site
     steps:
       - uses: actions/checkout@v5
-      - uses: actions/setup-node@v4
+      - uses: actions/setup-node@v5
         with:
           node-version: ${{ env.NODE_VERSION }}
       - name: Cache Node Modules
@@ -96,7 +96,7 @@ jobs:
         working-directory: site
     steps:
       - uses: actions/checkout@v5
-      - uses: actions/setup-node@v4
+      - uses: actions/setup-node@v5
         with:
           node-version: ${{ env.NODE_VERSION }}
       - name: Cache Node Modules
@@ -124,7 +124,7 @@ jobs:
         working-directory: site
     steps:
       - uses: actions/checkout@v5
-      - uses: shivammathur/setup-php@2.35.4
+      - uses: shivammathur/setup-php@2.35.5
         with:
           php-version: ${{ env.PHP_VER }}
       - name: Cache Composer
@@ -151,7 +151,7 @@ jobs:
         working-directory: site
     steps:
       - uses: actions/checkout@v5
-      - uses: shivammathur/setup-php@2.35.4
+      - uses: shivammathur/setup-php@2.35.5
         with:
           php-version: ${{ env.PHP_VER }}
       - name: Cache Composer
@@ -187,7 +187,7 @@ jobs:
         working-directory: site
     steps:
       - uses: actions/checkout@v5
-      - uses: shivammathur/setup-php@2.35.4
+      - uses: shivammathur/setup-php@2.35.5
         with:
           php-version: ${{ env.PHP_VER }}
           extensions: imagick
@@ -220,7 +220,7 @@ jobs:
     runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v5
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: ${{ env.PYTHON_VERSION }}
       - name: Cache Pip
@@ -242,7 +242,7 @@ jobs:
     runs-on: ubuntu-22.04
     steps:
       - uses: actions/checkout@v5
-      - uses: actions/setup-python@v5
+      - uses: actions/setup-python@v6
         with:
           python-version: ${{ env.PYTHON_VERSION }}
       - name: Cache Pip
@@ -959,7 +959,7 @@ jobs:
           sudo chmod -R a+rwx  ${SUBMITTY_INSTALL_DIR}
           sudo chmod -R a+rwx /tmp/
 
-      - uses: actions/setup-node@v4
+      - uses: actions/setup-node@v5
         with:
           node-version: ${{ env.NODE_VERSION }}
       - name: Cache Node Modules

.github/workflows/save_vm_mac_arm.yml

@@ -0,0 +1,70 @@
+name: Package Cloud VM - macOS ARM
+
+on:
+  schedule:
+    - cron: '0 0 * * 0'
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  vagrant-up:
+    runs-on: macos-15-xlarge
+    steps:
+      - uses: actions/checkout@v5
+        with:
+          fetch-depth: 0
+
+      - name: Install Vagrant
+        run: |
+          brew tap hashicorp/tap
+          brew install hashicorp/tap/hashicorp-vagrant
+
+      - name: Install VirtualBox
+        run: brew install --cask virtualbox
+
+      - name: Install HCP CLI
+        run: brew install hashicorp/tap/hcp
+
+      - name: Get latest version
+        id: get-version
+        run: |
+          TAG=$(git describe --tags --abbrev=0)
+          if ! [[ $TAG =~ ^v[0-9]{2}\.[0-9]{2}\.[0-9]{2}$ ]]; then
+            echo "Invalid tag name: '$TAG'"
+            exit 1
+          fi
+          echo "version=${TAG:1}" >> $GITHUB_OUTPUT
+
+      - name: Vagrant Up
+        run: CI=1 vagrant up
+
+      - name: Validate image
+        run: curl --show-error --fail --include http://localhost:1511
+
+      - name: Save image
+        run: vagrant package --output submitty.box
+
+      - name: Get HCP token
+        id: hcp-token
+        run: |
+          hcp auth login --client-id=${{ secrets.HCP_CLIENT_ID }} --client-secret=${{ secrets.HCP_CLIENT_SECRET }}
+          echo "HCP_TOKEN=$(hcp auth print-access-token)" >> $GITHUB_OUTPUT
+
+      - name: Publish image
+        run: |
+          export VAGRANT_CLOUD_TOKEN="${{ steps.hcp-token.outputs.HCP_TOKEN }}"
+          vagrant cloud auth login
+          vagrant cloud publish skara9/submitty-u22-arm ${{ steps.get-version.outputs.version }}.$(date +"%y%m%d%H%M") virtualbox submitty.box --release --force
+          vagrant cloud auth logout
+
+      - name: Acquire Job ID
+        if: failure()
+        id: get-job-id
+        env:
+          GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          jobs=$(gh api repos/${{ github.repository }}/actions/runs/${{ github.run_id}}/attempts/${{ github.run_attempt }}/jobs)
+          job_id=$(echo $jobs | jq -r '.jobs[] | select(.runner_name=="${{ runner.name }}") | .id')
+          echo "job_id=$job_id" >> $GITHUB_OUTPUT

.setup/bin/versions.sh

@@ -8,7 +8,7 @@
 export AnalysisTools_Version=v22.03.00
 export AnalysisToolsTS_Version=v23.10.00
 export Lichen_Version=v23.09.00
-export RainbowGrades_Version=v24.12.00
+export RainbowGrades_Version=v25.10.00
 export Tutorial_Version=v25.06.03
 export SysadminTools_Version=v25.01.00
 export Localization_Version=v23.08.02

.setup/pip/dev_requirements.txt

@@ -6,4 +6,4 @@ flake8-bugbear==24.12.12
 flake8==7.3.0
 
 # Code Formatter
-black==25.1.0
+black==25.9.0

.setup/pip/system_requirements.txt

@@ -17,7 +17,7 @@ python-pam==2.0.2
 ruamel.yaml==0.18.15
 psycopg2-binary==2.9.10
 sqlalchemy==2.0.42
-psutil==7.0.0
+psutil==7.1.0
 python-dateutil==2.9.0.post0
 watchdog==6.0.0
 xlsx2csv==0.8.4

more_autograding_examples/test_notes_upload/config/config.json

@@ -14,10 +14,7 @@
 
     // needed for /usr/bin/mv
     "allow_system_calls" : [
-        "COMMUNICATIONS_AND_NETWORKING_SIGNALS",
-        "FILE_MANAGEMENT_MOVE_DELETE_RENAME_FILE_DIRECTORY",
-        "PROCESS_CONTROL_ADVANCED",
-        "PROCESS_CONTROL_NEW_PROCESS_THREAD"
+        "ALLOW_ALL_RESTRICTED_SYSTEM_CALLS"
     ],
 
     "autograding" : {

more_autograding_examples/test_notes_upload_3page/config/config.json

@@ -14,10 +14,7 @@
 
     // needed for /usr/bin/mv
     "allow_system_calls" : [
-        "COMMUNICATIONS_AND_NETWORKING_SIGNALS",
-        "FILE_MANAGEMENT_MOVE_DELETE_RENAME_FILE_DIRECTORY",
-        "PROCESS_CONTROL_ADVANCED",
-        "PROCESS_CONTROL_NEW_PROCESS_THREAD"
+        "ALLOW_ALL_RESTRICTED_SYSTEM_CALLS"
     ],
 
     "autograding_method": "docker",

site/app/controllers/ChatroomController.php

@@ -312,23 +312,19 @@ public function clearMessages(string $chatroom_id): JsonResponse {
 
         // Get message IDs for socket notifications before bulk deletion
         $messages = $em->getRepository(Message::class)->findBy(['chatroom' => $chatroom_id, 'is_deleted' => false], ['timestamp' => 'ASC']);
-        $message_ids = array_map(function ($message) {
-            return $message->getId();
-        },
-        $messages);
 
         // Bulk update to mark all messages as deleted - optimized to avoid N+1 queries
         $em->createQuery('UPDATE app\entities\chat\Message m SET m.is_deleted = true WHERE m.chatroom = :chatroom_id AND m.is_deleted = false')
            ->setParameter('chatroom_id', $chatroom_id)
            ->execute();
 
         // Send socket messages for each deleted message ID
-        foreach ($message_ids as $message_id) {
+        foreach ($messages as $message) {
             $msg_array = [];
             $msg_array['type'] = 'message_delete';
-            $msg_array['socket'] = "chatroom_$chatroom_id";
-            $msg_array['id'] = $message_id;
-            $this->sendSocketMessage($msg_array);
+            $msg_array['chatroom_id'] = $message->getChatroom()->getId();
+            $msg_array['message_id'] = $message->getId();
+            $this->sendSocketMessage($msg_array, true);
         }
         return JsonResponse::getSuccessResponse("cleared chatroom $chatroom_id successfully");
     }

site/app/controllers/HomePageController.php

@@ -113,6 +113,43 @@ public function getGroups($user_id = null): MultiResponse {
         );
     }
 
+    #[Route("/home/go_to_course_notifications", methods: ["POST"])]
+    public function goToCourseNotifications(): void {
+        $courses = $this->courses;
+        $course_title = $_POST['course'];
+        foreach ($courses as $course) {
+            if ($course->getTitle() === $course_title) {
+                $semester = $course->getTerm();
+                $this->core->loadCourseConfig($semester, $course_title);
+                $this->core->loadCourseDatabase();
+                $url = $this->core->buildCourseUrl(['notifications']);
+                $this->core->redirect($url);
+                return;
+            }
+        }
+        $this->core->addErrorMessage("Course not found.");
+        $this->core->redirect($this->core->buildUrl(['home']));
+    }
+
+    #[Route("/home/mark_seen", methods: ["POST"])]
+    public function markNotificationsAsSeen(): void {
+        $courses = $this->courses;
+        $user_id = $this->core->getUser()->getId();
+        $original_config = clone $this->core->getConfig();
+        $course_title = $_POST['course'];
+        $notification_id = $_POST['notification_id'];
+        foreach ($courses as $course) {
+            if ($course->getTitle() === $course_title) {
+                $semester = $course->getTerm();
+                $this->core->loadCourseConfig($semester, $course_title);
+                $this->core->loadCourseDatabase();
+                $this->core->getQueries()->markNotificationAsSeen($user_id, $notification_id);
+                break;
+            }
+        }
+        $this->core->setConfig($original_config);
+    }
+
     /**
      * Returns recent notifications for a user
      * @return array<int, Notification>