Refactor SLAF tokenizer interfaces#54
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alam-shahul wants to merge 17 commits into
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Rework SLAFDataLoader and DistributedSLAFDataLoader to accept instantiated tokenizers instead of selecting tokenizers by type. Add tokenizer-owned apply(), tokenize_grouped(), tokenizer_name, and get_factory_kwargs() entrypoints so local and distributed preprocessing depend on the tokenizer interface rather than tokenizer.window internals. Update dataset and worker tokenization paths to preserve scGPT dual-stream values output while keeping the shared schema rooted in slaf.core.tabular_schema.
Update uv.lock with OmegaConf + dependencies.
Update uv.lock.
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Rework SLAFDataLoader and DistributedSLAFDataLoader to accept instantiated tokenizers instead of selecting tokenizers by type.
Add tokenizer-owned apply(), tokenize_grouped(), tokenizer_name, and
get_factory_kwargs() entrypoints so local and distributed preprocessing depend on the tokenizer interface rather than tokenizer.window internals.
Update dataset and worker tokenization paths to preserve scGPT dual-stream values output while keeping the shared
schema rooted in slaf.core.tabular_schema.