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v0.3.0#14

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jhollway merged 11 commits into
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Jun 19, 2026
Merged

v0.3.0#14
jhollway merged 11 commits into
mainfrom
develop

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@jhollway

@jhollway jhollway commented Jun 19, 2026 •
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Description

Package

  • Improved docs/examples to use base R pipe (|>) instead of magrittr's %>%
  • Improved dependency requirements (R >= 4.1.0)
  • Improved startup messages to be more succinct

Measures

  • Fixed node_by_homophily() to work when attribute is provided as a vector (e.g., a membership vector)
  • Improved node_by_homophily() to avoid calling as_igraph() multiple times

Motifs

  • Fixed net_x_hazard() to use diff_model$t for naming the returned data frame columns, rather than the deprecated diff_model$time

Tutorials

  • Updated topology tutorial to use base R pipe (|>) instead of magrittr's %>%
  • Updated centrality tutorial to use base R pipe (|>) instead of magrittr's %>%

Checklist:

  • Documentation
    • DESCRIPTION file version is bumped by the appropriate increment (major, minor, patch)
    • Date in DESCRIPTION is correct
    • Longer functions are commented inline or broken down into helper functions to help debugging
  • PR form
    • Title indicates expected version number
    • PR description above and the NEWS.md file are aligned
    • Description above itemizes changes under subsection titles, e.g. "## Data"
    • Closed, fixed, or related issues are referenced and explained in the description above, e.g. "Fixed #0 by adding A"

Copilot AI and others added 8 commits June 17, 2026 14:34
Initial plan
ba83d52
Fix node_by_homophily to subset attribute vector for ego subgraphs
43b44f0 
When a vector attribute (e.g. from node_in_community()) is passed to
node_by_homophily(), it must be subsetted to match the nodes in each
ego subgraph before being passed to net_by_homophily(). Previously,
the full attribute vector was passed, causing "non-conformable arrays"
errors when computing outer products with the smaller subgraph matrix.

Closes #12
@jhollway
Shorter startup messages
04e80b5
@jhollway
Dropped unnecessary dplyr dependence, but need manynet v2.1 or above
431b0e5
@jhollway
Moved to R pipes everywhere
1f6efd3
@jhollway
Returned dplyr dependence for mark functions, upgraded R dependence t…
699be8a 
…o 4.1
@jhollway
Fixed bug in net_x_hazard() where it was looking for time instead of t
ae3331e
@jhollway
Updated netrics tutorials to new pipes
88ae913
Copilot AI review requested due to automatic review settings June 19, 2026 19:35
Copilot AI reviewed Jun 19, 2026
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Pull request overview

This PR appears to prepare the netrics R package for the v0.2.4 release by migrating examples/docs toward the base R pipe (|>), tightening dependency requirements (R >= 4.1.0), and refreshing/generated documentation. It also adjusts homophily measurement to accept vector attributes and adds a regression test for that behavior.

Changes:

  • Add a test ensuring node_by_homophily() works when attribute is provided as a vector (e.g., a membership vector).
  • Replace many %>% pipelines in package code/docs with |> and remove the %>% re-export/documentation.
  • Update DESCRIPTION (version + dependency floor) and regenerate/clean up Rd and NAMESPACE entries.

Reviewed changes

Copilot reviewed 64 out of 79 changed files in this pull request and generated 3 comments.

Show a summary per file
File Description
tests/testthat/test-measure_nodes.R Adds a regression test for node_by_homophily() with vector attributes.
R/zzz.R Tweaks startup CLI tips text.
R/motif_census.R Fixes hazard motif naming to use diff_model$t.
R/motif_brokerage.R Converts a dplyr pipeline from %>% to `
R/member_equivalence.R Formatting/indentation cleanup only.
R/member_core.R Updates examples to use `
R/member_components.R Updates examples to use `
R/measure_heterogeneity.R Updates node_by_homophily() to accept vector attributes.
R/measure_diffusion.R Converts several pipelines from %>% to `
R/measure_centrality_closeness.R Updates examples to use `
R/measure_centrality_between.R Updates examples to use `
R/mark_ties.R Updates examples to use `
R/mark_nodes.R Converts pipelines to `
R/class_metrics.R Removes %>% re-export roxygen block.
NAMESPACE Removes export("%>%") and changes dplyr imports.
man/reexports.Rd Removes generated re-export documentation for %>%.
man/motif_periods.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_path.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_node.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_net.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_hierarchy.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_hazard.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_exposure.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_brokerage_node.Rd Fixes manynet link target + whitespace/seealso formatting.
man/motif_brokerage_net.Rd Fixes manynet link target + whitespace/seealso formatting.
man/method_kselect.Rd Fixes manynet link target.
man/method_cluster.Rd Fixes manynet link target.
man/member_equivalence.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_diffusion.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_core.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_components.Rd Fixes manynet link target + converts example pipes + seealso formatting.
man/member_community.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_community_non.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_community_hier.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_cliques.Rd Fixes manynet link target + whitespace/seealso formatting.
man/member_brokerage.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_periods.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_hierarchy.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_fragmentation.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_features.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_diverse_node.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_diverse_net.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_diffusion_node.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_diffusion_net.Rd Whitespace/seealso formatting.
man/measure_diffusion_infection.Rd Whitespace/seealso formatting.
man/measure_core.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_cohesion.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_closure.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_closure_node.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_centralities_eigen.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_centralities_degree.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_centralities_close.Rd Fixes manynet link target + converts example pipe + updates to_undirected link + seealso formatting.
man/measure_centralities_between.Rd Fixes manynet link target + converts example pipe + updates to_undirected link + seealso formatting.
man/measure_centralisation_eigen.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_centralisation_degree.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_centralisation_close.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_centralisation_between.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_central_eigen.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_central_degree.Rd Fixes manynet link target + seealso formatting.
man/measure_central_close.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_central_between.Rd Fixes manynet link target + updates to_undirected link + seealso formatting.
man/measure_brokerage.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_broker_tie.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_broker_node.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_breadth.Rd Fixes manynet link target + whitespace/seealso formatting.
man/measure_assort_node.Rd Fixes manynet link target + equation formatting + seealso formatting.
man/measure_assort_net.Rd Fixes manynet link target + equation formatting + seealso formatting.
man/mark_triangles.Rd Fixes manynet link target + converts example pipes + seealso formatting.
man/mark_ties.Rd Fixes manynet link target + converts example pipe + seealso formatting.
man/mark_select_tie.Rd Fixes manynet link target + seealso formatting.
man/mark_select_node.Rd Fixes manynet link target + seealso formatting.
man/mark_nodes.Rd Fixes manynet link target + seealso formatting.
man/mark_dyads.Rd Fixes manynet link target + seealso formatting.
man/mark_diff.Rd Fixes manynet link target + seealso formatting.
man/mark_degree.Rd Fixes manynet link target + seealso formatting.
man/mark_core.Rd Fixes manynet link target + converts example pipe + seealso formatting.
inst/tutorials/tutorial6/topology.Rmd Updates tutorial pipelines to use `
inst/tutorials/tutorial3/centrality.Rmd Updates some tutorial pipelines/verbs (e.g., rename_nodes) and converts one code chunk to `
DESCRIPTION Bumps version to 0.2.4, raises minimum R/manynet versions, adds Config/roxygen2/version.
Files not reviewed (13)
  • man/mark_core.Rd: Generated file
  • man/mark_degree.Rd: Generated file
  • man/mark_diff.Rd: Generated file
  • man/mark_dyads.Rd: Generated file
  • man/mark_nodes.Rd: Generated file
  • man/mark_select_node.Rd: Generated file
  • man/mark_select_tie.Rd: Generated file
  • man/mark_ties.Rd: Generated file
  • man/mark_triangles.Rd: Generated file
  • man/measure_assort_net.Rd: Generated file
  • man/measure_assort_node.Rd: Generated file
  • man/measure_breadth.Rd: Generated file
  • man/measure_broker_node.Rd: Generated file

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Comment thread NAMESPACE
Comment thread NAMESPACE
Comment thread R/measure_heterogeneity.R Outdated
@jhollway jhollway changed the title v0.2.4 v0.3.0 Jun 19, 2026
@jhollway jhollway merged commit 5f885a5 into main Jun 19, 2026
0 of 3 checks passed
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@jhollway