This repository contains the code used to generate the figures presented in the paper "The usage of transcriptomics datasets as sources of Real-World Data for clinical trialling". The paper describes the development of a patient repository that combines high-throughput transcriptomics data with clinical and demographic Real-World Data (RWD). This repository includes the scripts necessary for reproducing the figures.
- R scripts for figure generation (
scripts/)
Due to data filesize limits imposed by GitHub, datasets are available in a separate repository. The files have been uploaded to Zenodo.
- R (>= 3.6)
- Required R packages: (see
R_packages.txt)
If you use this code, please cite the following paper:
Title: The usage of transcriptomics datasets as sources of Real-World Data for clinical trialling Authors: Pedro Matos-Filipe, Juan Manuel García-Illarramendi, Guillem Jorba, Baldo Oliva, Judith Farrés, José Manuel Mas Year: 2024