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1. SimOmics SimOmics Public

   SimOmics: Simulation toolkit for generating synthetic multi-omics data with latent structure and block-wise correlation

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2. OmicsDesk OmicsDesk Public

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3. PathogenHawk PathogenHawk Public

   PathogenHawk: A pathogen machine learning toolkit for predicting antimicrobial resistance (AMR) from genomic features. Supports variant calling, feature extraction, model training, and visualization.

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4. ImmunoBridgeAI ImmunoBridgeAI Public

   ImmunoBridgeAI is a reproducible platform showcasing AI applications in immunogenomics. It integrates single-cell multi-omics (scRNA + VDJ) and immune repertoire (TCR/BCR) data, enabling deep gener…

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5. MicroTrace MicroTrace Public

   MicroTrace is a lightweight R package for detecting SNP-based transmission clusters from pathogen genome distance matrices.

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6. HybridQC HybridQC Public

   HybridQC: An R package for hybrid quality control of scRNA-seq data using basic metrics and machine learning-based outlier detection.

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