B-UMMI / chewBBACA Star 148 Code Issues Pull requests Discussions BSR-Based Allele Calling Algorithm bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing Updated Mar 13, 2026 HTML
liora-bioinformatics / PhyloTrace Star 9 Code Issues Pull requests Discussions PhyloTrace is a GUI platform for bacterial monitoring offering a toolkit of analyses like hashed cgMLST typing and Antimicrobial Resistance Screening. phylogenetic-trees epidemiology genetic-analysis infectious-diseases cgmlst bacterial-genomes antimicrobial-resistance allele-calling bacterial-typing Updated Mar 18, 2026 R
genpat-it / chewcall Star 0 Code Issues Pull requests Fast allele caller for cgMLST/wgMLST schemas, compatible with chewBBACA. 6-10x faster with SIMD Smith-Waterman (parasail). rust bioinformatics genomics smith-waterman mlst cgmlst wgmlst allele-calling parasail foodborne-pathogens Updated Mar 19, 2026 Rust