Kieran et al. 2025 - Scientific Reports. R code for lethality/morbidity machine learning with tissues.
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Dec 10, 2025 - R
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animal-model
Here are 9 public repositories matching this topic...
Codes for the final project of the subject Computational Biophysics of the degree Engineering Physics (UPC). By Marta Alcalde i Núria Mercadé.
deep-neural-networks deep-learning stroke datamining animal-behavior animal-tracking deeplabcut animal-model
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Jan 10, 2022 - Jupyter Notebook
Kieran et al. 2024 - npj Viruses - influenza A transmission thersholds
machine-learning influenza ferret animal-model ncird ncird-id cdc-influenza-division airborne-transmission airborne-pathogen
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Dec 19, 2024 - R
Pulit-Penaloza et al. 2026 - Nature Communications. Advancing A(H5N1) influenza risk assessment in ferrets through comparative evaluation of airborne virus shedding patterns R code.
influenza risk-assessment ferret animal-model ncird ncird-id cdc-influenza-division airborne-pathogen
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Mar 9, 2026 - R
Kieran et al. (under revision) - PLoS Computational Biology
machine-learning influenza predictive-modeling ferret animal-model disease-severity ncird ncird-id cdc-influenza-division
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Mar 26, 2026 - R
A computational pipeline for analyzing tissue regeneration in volumetric muscle loss treatment studies. Enables automated processing of histological and immunohistochemical whole slide images to quantify tissue components, inflammatory responses, and regenerative markers. Provides standardized analysis of spatial tissue heterogeneity.
regenerative-medicine tissue-engineering animal-model volumetric-muscle-loss scaffold-free-biofabricaiton
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Aug 13, 2025 - Python
Neural network pruning for finding a sparse computational model for controlling a biological motor task.
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Jan 17, 2023 - Jupyter Notebook
Analysis for the manuscript: 'Coral adaptation to climate change: Meta-analysis reveals high heritability across multiple traits', published in Global Change Biology
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Mar 22, 2025 - HTML
Kieran et al. 2024 - Communication Biology - R code for machine learning in influenza infected ferrets
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Mar 17, 2026 - R
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