Curated MATLAB portfolio of reduced-order physiological models in circulation, respiratory mechanics, gas exchange, and feedback control.
This is the code repository for the paper "Optimizing ODE-derived Synthetic Data for Transfer Learning in Dynamical Biological Systems".
MIRELLA: A mathematical model explains the effect of miRNA (MI) REgulation on intracellular resource aLLocAtion
UAI 2022: "Capturing Actionable Dynamics with Structured Latent Ordinary Differential Equations"
This repository explores the geometric stability of complex biochemical networks using the VNAE framework.
Forced ratched model of molecular motors.
Final project for the course Simulation and Modeling for Biological Systems.
Bottom-up dynamical modeling of biological systems using ordinary, partial, and stochastic differential equations.
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