Computation and inference on exact solutions of coalescent distributions under diverse demographic scenarios.
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Mar 25, 2026 - Python
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coalescent-theory
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SpeciesTopoTestR: Likelihood-based hypothesis tests of species topologies in R
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Aug 25, 2022 - R
Python scripts and Jupyter notebooks relating to the manuscript: Simon, H. and Huttley, G., 2021 Bayesian Inference of Joint Coalescence Times for Sampled Sequences. bioRxiv doi = 10.1101/2021.07.23.453461.
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Jan 18, 2024 - Jupyter Notebook
This repository derives analytical conditions for strategy evolution in populations using coalescent-theory-based methods. We use the sympy module in Python to derive famous results in classic papers.
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Aug 29, 2025 - Jupyter Notebook
code accompanying the manuscript Gene genealogies in haploid populations evolving according to sweepstakes reproduction
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Jan 15, 2026 - CWeb
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