An implementation of ESM2 in Equinox+JAX

Repository of the paper "Exploring sequence landscape of biosynthetic gene clusters with protein language models" published at ICML2024 workshop Machine Learning for Life and Material Science: From Theory to Industry applications

Prediction of anti-fungal proteins using protein language models

Zero-shot variant pathogenicity prediction via spectral covariance analysis of ESM2 hidden states | Claw4S 2026

Residue-residue contact prediction using ESM2 enhanced with template-based structural priors from homologous sequences.

Protein subcellular localization classifier using ESM-2 embeddings and PyTorch MLP.

Similarity search for protein sequences using ESM-2 embeddings and Approximate Nearest Neighbor (ANN) methods.

Fusion model of ProtBERT and ESM-2 for cell-penetrating peptide prediction (Reproduction of FusPB-ESM2, Comp. Biol. Chem., 2024)

Federated learning framework for protein language models (ESM2) using NVFlare + Flower. Supports multi-GPU simulation, HPC/SLURM deployment, and HuggingFace dataset integration.

🧬 CAFA6 Protein Function Prediction | Hybrid DL + BLAST Ensemble | Solo Participant | Public LB 0.283

ESM2-15B Protein Embeddings

Evaluating ESM-2 protein embeddings for variant effect prediction against Deep Mutational Scanning fitness scores

Multi-phase peptide ML pipeline for hemolysis prediction, generative design, and closed-loop optimization, built on transformers and modern PyTorch tooling.

A REST FastAPI service comparing protein sequences using transformer embeddings from ESM-2

Predict fitness phenotypes and invasion machinery in apicomplexan parasites from protein sequence using ESM-2 embeddings.

AI-powered TCR pathology classification using ESM2 embeddings for disease-reactive TCR discovery

TCR Epitope Generation Model with Top-K Prediction