Human survival post-LGM relied on adaptation, cooperation, and innovation. Neanderthal and Denisovan genes shaped immunity and metabolism, but uniform modern diets clash with these traits, fueling chronic disease. Embracing diversity can drive health and resilience.

An ontology for ocular immune-mediated inflammatory diseases

Code and data for the manuscript "Transcriptomic clustering of critically ill COVID-19 patients"

Search PubMed for Gene associations with Atherosclerosis

Analysis in the paper Mitra et.al. PNAS 2017.

Combined Ontology for Inflammatory Diseases

A Python package for calculating the Dietary Inflammatory Index (DII) from nutrient intake data

This repository contains the code used for the data modeling and analysis presented in Kalb, Vo et al. Scientific Reports 11, 2021.

Hypothesis Intrinsic Autism and Immune-Mediated Neurodevelopmental Disorders

Metabolism of serum neurotransmitter precursors after COVID-19

Scripts for the research paper "Unveiling CNS Cell Morphology with Deep Learning: A Gateway to Anti-Inflammatory Compound Screening"

scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735

Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.

#ioneurosciencehubfootnoteIntersection=) Exploring the intersection of vitamin B12 and cognitive decline in older adults.

PatientINF embedding models - with forum extraction and model building scripts

🧠 Explore the link between intrinsic autism and immune-mediated neurodevelopmental disorders to advance understanding and improve accommodations.