PyStokes: phoresis and Stokesian hydrodynamics in Python. github.com/rajeshrinet/pystokes

PyGL: statistical field theory in Python. github.com/rajeshrinet/pygl

This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at: https://www.cell.com/cell/fulltext/S0092-8674(24)00232-0

Studying the Ising model phase transition using PCA.

This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucleation of ordered assemblies.

Multi-condensate state as a functional strategy to optimize the cell signaling output

Simulation scripts used in the study "Separation of sticker-spacer energetics governs the coalescence of metastable biomolecular condensates"

Exploring the dynamics of liquid-liquid phase separation (LLPS) in a confined system with focusing on nonequilibrium condition and the broken of detailed balance (Phys.Rev.E)

RG/RGG tract grammar analysis + figure-generation scripts, with CALVADOS v3 slab simulation post-processing

Code of project realized at the University of Geneva in the group of Karsten Kruse, in collaboration with the group of Charlotte Aumeier.

Apply semi-implicit pseudo-spectral method to model the spinodal decomposition kinetics (based on Cahn-Hilliard framework) of a binary (polymer-solvent) and ternary (polymer-polymer-solvent) mixture

This GitHub repository contains the code and data for the manuscript "Dynamical control enables the formation of demixed biomolecular condensates" (BioRxiv link: https://www.biorxiv.org/content/10.1101/2023.01.04.522702v1)