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Parallelised Analysis of k-mers derived from publicly available Clostridium Difficile Isolates

As the final project for 2025 instance of the Techniques and Technologies for Scientific Software Engineering course at Uppsala University, this repository contains the relevant files in support of the associated report submitted.

Installation and Running

Conda environment is to be created from environment file in repository. Then, assuming all dependencies and required data files are satisfied, simply write the filepath to current directory in run_model.py before running the file.

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Final Project for TTSSE course

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  • Python 100.0%