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133 changes: 133 additions & 0 deletions src/casecrawler/export/blueprint_release.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,133 @@
from __future__ import annotations

import json
from collections import Counter
from datetime import datetime, timezone
from pathlib import Path
from typing import Any

from casecrawler.models.blueprint import ReleaseReadinessTier
from casecrawler.storage.dataset_store import DatasetStore


def build_blueprint_release_summary(
store: DatasetStore,
dataset_id: str,
*,
generated_at: str | None = None,
) -> dict[str, Any]:
blueprints = store.list_blueprints(dataset_id=dataset_id, limit=None)
records = store.list_records(dataset_id=dataset_id, limit=None)
judge_reports = store.list_judge_reports(dataset_id=dataset_id, limit=None)
attempts = store.list_generation_attempts(dataset_id=dataset_id, limit=None)

validation_reports = {
blueprint.blueprint_id: store.get_blueprint_validation_report(
blueprint.blueprint_id
)
for blueprint in blueprints
}
materialized_blueprint_ids = sorted(
{
str(record.metadata["blueprint_id"])
for record in records
if record.metadata.get("blueprint_id")
}
)
ready_blueprint_ids = sorted(
blueprint_id
for blueprint_id, report in validation_reports.items()
if report is not None and report.research_release_ready
)
missing_materialized = sorted(
set(ready_blueprint_ids) - set(materialized_blueprint_ids)
)

return {
"dataset_id": dataset_id,
"generated_at": generated_at or datetime.now(timezone.utc).isoformat(),
"blueprint_count": len(blueprints),
"validation_report_count": sum(
1 for report in validation_reports.values() if report is not None
),
"research_release_ready_count": len(ready_blueprint_ids),
"materialized_record_count": sum(
1 for record in records if record.metadata.get("blueprint_id")
),
"materialized_blueprint_ids": materialized_blueprint_ids,
"missing_materialized_blueprint_ids": missing_materialized,
"judge_report_count": len(judge_reports),
"passing_judge_report_count": sum(1 for report in judge_reports if report.passed),
"attempt_counts": dict(Counter(attempt.status.value for attempt in attempts)),
"role_attempt_counts": dict(Counter(attempt.role.value for attempt in attempts)),
"tier_counts": _tier_counts(validation_reports),
"organ_system_counts": dict(
Counter(blueprint.organ_system for blueprint in blueprints)
),
"setting_counts": dict(Counter(blueprint.setting for blueprint in blueprints)),
"non_ready_blueprints": _non_ready_blueprints(validation_reports),
}


def write_blueprint_release_summary(
store: DatasetStore,
dataset_id: str,
output: str | Path,
*,
generated_at: str | None = None,
) -> dict[str, Any]:
summary = build_blueprint_release_summary(
store,
dataset_id,
generated_at=generated_at,
)
output_path = Path(output)
output_path.parent.mkdir(parents=True, exist_ok=True)
output_path.write_text(json.dumps(summary, indent=2, sort_keys=True) + "\n")
return summary


def _tier_counts(validation_reports: dict) -> dict[str, int]:
counts = Counter()
counts["missing"] = 0
for report in validation_reports.values():
if report is None:
counts["missing"] += 1
else:
counts[report.tier.value] += 1
for tier in ReleaseReadinessTier:
counts.setdefault(tier.value, 0)
return dict(counts)
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def _non_ready_blueprints(validation_reports: dict) -> list[dict[str, Any]]:
non_ready = []
for blueprint_id, report in sorted(validation_reports.items()):
if report is not None and report.research_release_ready:
continue
if report is None:
non_ready.append(
{
"blueprint_id": blueprint_id,
"tier": "missing",
"issues": [
{
"field": "blueprint_validation_report",
"message": "No validation report is persisted.",
}
],
}
)
continue
non_ready.append(
{
"blueprint_id": blueprint_id,
"tier": report.tier.value,
"issues": report.issues,
"schema_valid": report.schema_valid,
"clinically_plausible": report.clinically_plausible,
"grounded": report.grounded,
"judge_validated": report.judge_validated,
}
)
return non_ready
24 changes: 15 additions & 9 deletions src/casecrawler/storage/dataset_store.py
Original file line number Diff line number Diff line change
Expand Up @@ -345,7 +345,7 @@ def list_blueprints(
self,
dataset_id: str | None = None,
cohort_plan_id: str | None = None,
limit: int = 1000,
limit: int | None = 1000,
) -> list[ClinicalBlueprint]:
query = "SELECT blueprint_json FROM clinical_blueprints WHERE 1=1"
params: list = []
Expand All @@ -355,8 +355,10 @@ def list_blueprints(
if cohort_plan_id:
query += " AND cohort_plan_id = ?"
params.append(cohort_plan_id)
query += " ORDER BY blueprint_id LIMIT ?"
params.append(limit)
query += " ORDER BY blueprint_id"
if limit is not None:
query += " LIMIT ?"
params.append(limit)
rows = self._conn.execute(query, params).fetchall()
return [
ClinicalBlueprint.model_validate_json(row["blueprint_json"])
Expand Down Expand Up @@ -394,7 +396,7 @@ def list_generation_attempts(
dataset_id: str | None = None,
artifact_id: str | None = None,
role: GenerationRole | str | None = None,
limit: int = 1000,
limit: int | None = 1000,
) -> list[GenerationAttempt]:
query = "SELECT attempt_json FROM generation_attempts WHERE 1=1"
params: list = []
Expand All @@ -408,8 +410,10 @@ def list_generation_attempts(
role_value = role.value if isinstance(role, GenerationRole) else role
query += " AND role = ?"
params.append(role_value)
query += " ORDER BY attempt_id LIMIT ?"
params.append(limit)
query += " ORDER BY attempt_id"
if limit is not None:
query += " LIMIT ?"
params.append(limit)
rows = self._conn.execute(query, params).fetchall()
return [
GenerationAttempt.model_validate_json(row["attempt_json"])
Expand Down Expand Up @@ -486,7 +490,7 @@ def list_judge_reports(
self,
dataset_id: str | None = None,
artifact_id: str | None = None,
limit: int = 1000,
limit: int | None = 1000,
) -> list[JudgeReport]:
query = "SELECT report_json FROM judge_reports WHERE 1=1"
params: list = []
Expand All @@ -496,8 +500,10 @@ def list_judge_reports(
if artifact_id:
query += " AND artifact_id = ?"
params.append(artifact_id)
query += " ORDER BY report_id LIMIT ?"
params.append(limit)
query += " ORDER BY report_id"
if limit is not None:
query += " LIMIT ?"
params.append(limit)
rows = self._conn.execute(query, params).fetchall()
return [JudgeReport.model_validate_json(row["report_json"]) for row in rows]

Expand Down
159 changes: 159 additions & 0 deletions tests/test_blueprint_release_summary.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,159 @@
import json

from casecrawler.export.blueprint_release import (
build_blueprint_release_summary,
write_blueprint_release_summary,
)
from casecrawler.generation.blueprint_materializer import BlueprintMaterializer
from casecrawler.models.blueprint import (
BlueprintEvidence,
BlueprintValidationReport,
ClinicalBlueprint,
GenerationAttempt,
GenerationAttemptStatus,
GenerationRole,
JudgeReport,
ReleaseReadinessTier,
)
from casecrawler.storage.dataset_store import DatasetStore


def _blueprint(blueprint_id: str, *, organ_system: str = "cardiovascular"):
return ClinicalBlueprint(
blueprint_id=blueprint_id,
dataset_id="ds-1",
cohort_plan_id="plan-1",
archetype_name="anticoagulation decision",
organ_system=organ_system,
setting="outpatient",
patient={"age": 72, "sex": "female"},
chief_concern="Atrial fibrillation anticoagulation follow-up.",
diagnoses=[
{
"name": "atrial fibrillation",
"supporting_findings": ["ECG confirms AF"],
}
],
evidence=BlueprintEvidence(
supported_claims=["AF anticoagulation requires renal-dose review."],
citations=[{"source": "dailymed", "claim": "renal-dose review"}],
),
)


def _judge_report(blueprint_id: str, *, passed: bool = True) -> JudgeReport:
return JudgeReport(
report_id=f"judge-{blueprint_id}",
dataset_id="ds-1",
artifact_id=blueprint_id,
role=GenerationRole.JUDGE,
score=0.93 if passed else 0.41,
passed=passed,
rubric="blueprint_plausibility",
)


def _validation(
blueprint_id: str,
*,
tier: ReleaseReadinessTier,
judge_report: JudgeReport | None = None,
) -> BlueprintValidationReport:
return BlueprintValidationReport(
blueprint_id=blueprint_id,
tier=tier,
schema_valid=True,
clinically_plausible=tier
in {
ReleaseReadinessTier.CLINICALLY_PLAUSIBLE,
ReleaseReadinessTier.JUDGE_VALIDATED,
ReleaseReadinessTier.RESEARCH_RELEASE_READY,
},
grounded=tier == ReleaseReadinessTier.RESEARCH_RELEASE_READY,
judge_validated=tier
in {
ReleaseReadinessTier.JUDGE_VALIDATED,
ReleaseReadinessTier.RESEARCH_RELEASE_READY,
},
judge_reports=[judge_report] if judge_report is not None else [],
issues=[] if tier == ReleaseReadinessTier.RESEARCH_RELEASE_READY else [
{"field": "evidence.citations", "message": "missing citation"}
],
)


def test_build_blueprint_release_summary_aggregates_readiness_and_materialization(
tmp_path,
):
store = DatasetStore(db_path=str(tmp_path / "datasets.db"))
ready_blueprint = _blueprint("bp-ready")
draft_blueprint = _blueprint("bp-draft", organ_system="endocrine")
ready_judge = _judge_report("bp-ready")
draft_judge = _judge_report("bp-draft", passed=False)
store.save_blueprint(ready_blueprint)
store.save_blueprint(draft_blueprint)
store.save_judge_report(ready_judge)
store.save_judge_report(draft_judge)
store.save_blueprint_validation_report(
_validation(
"bp-ready",
tier=ReleaseReadinessTier.RESEARCH_RELEASE_READY,
judge_report=ready_judge,
)
)
store.save_blueprint_validation_report(
_validation(
"bp-draft",
tier=ReleaseReadinessTier.SCHEMA_VALID,
judge_report=draft_judge,
)
)
store.save_generation_attempt(
GenerationAttempt(
attempt_id="attempt-1",
dataset_id="ds-1",
role=GenerationRole.REPAIR,
status=GenerationAttemptStatus.REPAIR_REQUESTED,
provider="openai",
model="repair-model",
artifact_id="bp-draft",
)
)
BlueprintMaterializer(created_at="2026-05-06T10:00:00").materialize(
ready_blueprint,
validation_report=store.get_blueprint_validation_report("bp-ready"),
store=store,
require_release_ready=True,
)

summary = build_blueprint_release_summary(store, "ds-1")

assert summary["dataset_id"] == "ds-1"
assert summary["blueprint_count"] == 2
assert summary["validation_report_count"] == 2
assert summary["research_release_ready_count"] == 1
assert summary["materialized_record_count"] == 1
assert summary["materialized_blueprint_ids"] == ["bp-ready"]
assert summary["missing_materialized_blueprint_ids"] == []
assert summary["judge_report_count"] == 2
assert summary["passing_judge_report_count"] == 1
assert summary["attempt_counts"]["repair_requested"] == 1
assert summary["tier_counts"]["research_release_ready"] == 1
assert summary["tier_counts"]["schema_valid"] == 1
assert summary["tier_counts"]["missing"] == 0
assert summary["organ_system_counts"] == {
"cardiovascular": 1,
"endocrine": 1,
}
assert summary["non_ready_blueprints"][0]["blueprint_id"] == "bp-draft"


def test_write_blueprint_release_summary_writes_json(tmp_path):
store = DatasetStore(db_path=str(tmp_path / "datasets.db"))
store.save_blueprint(_blueprint("bp-1"))
output = tmp_path / "summary.json"

summary = write_blueprint_release_summary(store, "ds-1", output)

assert json.loads(output.read_text()) == summary
assert summary["blueprint_count"] == 1
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