updated tests, fix all linting errors and typecheck errors#68

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kaiden-keane wants to merge 20 commits intomainfrom

Commits on Feb 14, 2026

make files pass the linter
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Commits on Feb 15, 2026

remove debug_analysis, most of what it did can be done in debug.py and also was mostly a copy of analysis.py
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fix type errors in imaging
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rename files that are not true pytest tests to not have test in it so we don't fail tests unnecessarily
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test_nn was not doing anything actually helpful with shephard and should not therefore not be part of shephard -- was a standalone 'test' script
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remove labeller from path for testing -- not used anymore
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fix analysis test small errors
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fix lint stuff again
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Commits on Feb 21, 2026

Commits on Mar 7, 2026

Commits on Mar 20, 2026

Merge branch 'main' into cleaning
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