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Add Chapter 2 Documentation: Extending Hierarchical Model to Correlated Biomarkers #129

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c583b92
Update project description, word list, and ignore settings
Kwan-Jenny Aug 13, 2025
19442ee
# Update NEWS.md and WORDLIST for PR #129
Kwan-Jenny Aug 14, 2025
9f75730
# Version update
Kwan-Jenny Aug 14, 2025
20bea35
Merge branch 'main' into correlated-biomarkers-qmd
Kwan-Jenny Aug 14, 2025
7d533de
# Update version again and some edits
Kwan-Jenny Aug 15, 2025
caf8016
Merge branch 'correlated-biomarkers-qmd' of https://github.com/UCD-SE…
Kwan-Jenny Aug 15, 2025
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# Revision 1
Kwan-Jenny Aug 15, 2025
4802cfa
# Minor revision
Kwan-Jenny Aug 18, 2025
ab16eb6
# Minor revision (notation1)
Kwan-Jenny Aug 18, 2025
6ee0b56
# Revision (notation)
Kwan-Jenny Aug 18, 2025
9c82e87
# update WORDLIST
Kwan-Jenny Aug 18, 2025
98a54ee
# Add detailed Bayesian hierarchical model explanation with color-cod…
Kwan-Jenny Sep 11, 2025
841325e
# minor
Kwan-Jenny Sep 11, 2025
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# minor2
Kwan-Jenny Sep 11, 2025
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5 changes: 3 additions & 2 deletions .gitignore
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Expand Up @@ -18,8 +18,9 @@ docs
serodynamics.Rcheck/
serodynamics*.tar.gz
serodynamics*.tgz

inst/doc
docs
**/.quarto/

docsvignettes/*.pdf
vignettes/*.tex
docs/
2 changes: 1 addition & 1 deletion DESCRIPTION
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@@ -1,6 +1,6 @@
Package: serodynamics
Title: What the Package Does (One Line, Title Case)
Version: 0.0.0.9040
Version: 0.0.0.9041
Authors@R: c(
person("Peter", "Teunis", , "p.teunis@emory.edu", role = c("aut", "cph"),
comment = "Author of the method and original code."),
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1 change: 1 addition & 0 deletions NEWS.md
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Expand Up @@ -4,6 +4,7 @@

## New features

* Added Chapter 2 documentation on correlated biomarker model (#129)
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@d-morrison d-morrison Aug 25, 2025

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Suggested change
* Added Chapter 2 documentation on correlated biomarker model (#129)
* Added documentation on correlated biomarker model (#129)

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@d-morrison d-morrison Aug 25, 2025

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(@Kwan-Jenny I'm taking a look at this PR this afternoon and posted this edit early by accident; you can ignore it until I finish the full review)

* Including fitted and residual values as data frame in run_mod output. (#101)
* Added `plot_predicted_curve()` with support for faceting by multiple IDs (#68)
* Replacing old data object with new run_mod output (#102)
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45 changes: 45 additions & 0 deletions inst/WORDLIST
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Expand Up @@ -51,3 +51,48 @@ tibble
unstratified
vectorized
wishdf
Beamer
Biomarkers
Cov
Kronecker
ODEs
Sigma
Teunis
Theta
WAIC
al
alpha
b0
bayesian
boldsymbol
cd
cdots
dt
dy
et
frac
ge
iJ
le
leq
mathbb
mathcal
mu0
mu1
otimes
pre
rightarrow
t1
tau
th
theta
vec
y0
y1
mathrm
ddots
epidemiologic
iB
serodynamic’s
Shigella
vdots
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