Camera ready analysis2 migration#7

Merged

McClain-Thiel merged 5 commits into

mainfrom

camera-ready-analysis2-migration

May 13, 2026

Commits on May 1, 2026

Add v2 evaluation pipeline at per-model optimal temperatures
McClain-Thiel
committed

Commits on May 4, 2026

Phase 1: print-ready branch — gitignore, license, citation

McClain-Thiel
and
claude
committed
Phase 2: restructure src→plasmidrl, merge analysis2 QC, move assets

McClain-Thiel
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claude
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Phase 3: plasmidrl.data and plasmidrl.models public API

McClain-Thiel
and
claude
committed

Commits on May 13, 2026

cleaning up for public sharing
McClain-Thiel
committed