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@vatlab

Laboratory of Variant Analysis Tools

Dr. Bo Peng's Bioinformatic Tools for Variant Analysis

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  1. sos sos Public

    SoS workflow system for daily data analysis

    Python 283 45

  2. sos-notebook sos-notebook Public

    Multi-language Jupyter Notebook

    CSS 193 16

  3. varianttools varianttools Public archive

    software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis

    C 30 5

  4. jupyterlab-sos jupyterlab-sos Public

    Jupyterlab extension for SoS Polyglot Notebook and Workflow Engine, allows multiple kernels in one notebook

    HTML 76 8

  5. markdown-kernel markdown-kernel Public

    A markdown kernel for Jupyter

    Python 23 1

  6. transient-display-data transient-display-data Public

    A JupyterLab extension that displays transient display messages in console window

    TypeScript 6

Repositories

Showing 10 of 49 repositories
  • jupyterlab-sos Public

    Jupyterlab extension for SoS Polyglot Notebook and Workflow Engine, allows multiple kernels in one notebook

    vatlab/jupyterlab-sos’s past year of commit activity
    HTML 76 BSD-3-Clause 8 12 (2 issues need help) 10 Updated Jan 21, 2026
  • sos Public

    SoS workflow system for daily data analysis

    vatlab/sos’s past year of commit activity
    Python 283 BSD-3-Clause 45 67 (2 issues need help) 0 Updated Nov 6, 2025
  • sos-notebook Public

    Multi-language Jupyter Notebook

    vatlab/sos-notebook’s past year of commit activity
    CSS 193 BSD-3-Clause 16 44 (3 issues need help) 1 Updated Nov 5, 2025
  • codemirror-sos Public

    A codemirror language package for SoS

    vatlab/codemirror-sos’s past year of commit activity
    TypeScript 0 MIT 0 2 0 Updated Oct 6, 2024
  • transient-display-data Public

    A JupyterLab extension that displays transient display messages in console window

    vatlab/transient-display-data’s past year of commit activity
    TypeScript 6 BSD-3-Clause 0 2 1 Updated Sep 3, 2024
  • sos-docs Public

    Documentation of SoS

    vatlab/sos-docs’s past year of commit activity
    Jupyter Notebook 2 MIT 11 9 (2 issues need help) 0 Updated Aug 11, 2024
  • sos-pbs Public

    PBS task engine for SoS

    vatlab/sos-pbs’s past year of commit activity
    Python 1 BSD-3-Clause 1 5 0 Updated Apr 14, 2024
  • sos-python Public

    SoS extension for Python2 and Python3

    vatlab/sos-python’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Oct 11, 2023
  • sos-r Public

    SoS extension for R

    vatlab/sos-r’s past year of commit activity
    Python 3 BSD-3-Clause 3 7 (1 issue needs help) 1 Updated Aug 30, 2023
  • sos-matlab Public

    SoS extension for Matlab and Octave

    vatlab/sos-matlab’s past year of commit activity
    Python 2 BSD-3-Clause 3 2 0 Updated Aug 3, 2023

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