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1. process-bigraph process-bigraph Public

   Vivarium 2.0 simulation interfaces

   Jupyter Notebook 5 4

2. bigraph-schema bigraph-schema Public

   compositional type schemas

   Python 3 4

3. bigraph-viz bigraph-viz Public

   visualization tool for bigraph schema

   Jupyter Notebook 2 2

4. spatio-flux spatio-flux Public

   spatio-temporal microbial simulations with Vivarium 2.0

   Python 1 3

5. v2ecoli v2ecoli Public

   Whole-cell E. coli model in Vivarium 2

   Python

6. Viva-munk Viva-munk Public

   Python 2