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update catalog to include all data

Status: Open.

#41 In waldronlab/ImageFeatureTCGA;

· LiNk-NY opened on Jan 21, 2026

upload remaining cancers, e.g., TCGA-BRCA to cancerdatasci.org

Status: Open.

#39 In waldronlab/ImageFeatureTCGA;

· shbrief opened on Jan 20, 2026

Function for factor scaling to match the resolution of images

Status: Open.

#38 In waldronlab/ImageFeatureTCGA;

· shbrief opened on Jan 20, 2026

data provenance

Status: Open.

#37 In waldronlab/ImageFeatureTCGA;

· shbrief opened on Jan 20, 2026

Function to incorporate image features into TCGA MAE

Status: Open.

#36 In waldronlab/ImageFeatureTCGA;

· shbrief opened on Jan 20, 2026

add unit test

Status: Open.

#35 In waldronlab/ImageFeatureTCGA;

· billila opened on Jan 20, 2026

add h5ad and json instruction in import_features.Rmd

Status: Open.

#34 In waldronlab/ImageFeatureTCGA;

· billila opened on Jan 20, 2026

Convert provgigapath embeddings to parquet by slide/tile

enhancementNew feature or requestNew feature or request

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#32 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Jan 10, 2026

Functionality for summarizing hovernet data to bounding boxes, like image tiles.

Status: Open.

#27 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Dec 9, 2025

Modify list files function to read from metadata catalog file.

Status: Open.

#18 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Nov 25, 2025

Establish and maintain hovernet and provgigapath data in r2 cloud bucket using rclone

Status: Open.

#16 In waldronlab/ImageFeatureTCGA;

· seandavi opened on Nov 25, 2025

Functions to calculate slide-level summary statistics of HoVer-Net output

Status: Open.

#7 In waldronlab/ImageFeatureTCGA;

· shbrief opened on Nov 13, 2025