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keep Node 20 on old Ubuntu containers C/C++ CI #430: Commit d90ea34 pushed by imsuneth
2h 13m 40s dev
dev
2h 13m 40s
fix varmod: tag CpG entries with strand C/C++ CI #429: Commit 2178567 pushed by imsuneth
2h 20m 26s dev
dev
2h 20m 26s
count and warn imprecise variant C/C++ CI #428: Commit 4c693f2 pushed by imsuneth
2h 38m 3s dev
dev
2h 38m 3s
preserve original chrom/POS in region fixtures C/C++ CI #427: Commit d4e7d1d pushed by imsuneth
2h 17m 56s dev
dev
2h 17m 56s
fix osx 14 test failure C/C++ CI #426: Commit 5ef9312 pushed by imsuneth
2h 28m 37s dev
dev
2h 28m 37s
add region-based varmod regression tests, reorganize varmod fixtures C/C++ CI #425: Commit b1004e1 pushed by imsuneth
2h 30m 3s dev
dev
2h 30m 3s
add phase-aware variant filtering using, add GT column to outputs C/C++ CI #424: Commit ce54767 pushed by imsuneth
1h 47m 27s dev
dev
1h 47m 27s
fix ref_cg_pos for trailing base when ref_len != alt_len C/C++ CI #423: Commit 5d6368a pushed by imsuneth
1h 57m 1s dev
dev
1h 57m 1s
add script to compare freq bed with mmtsv C/C++ CI #422: Pull request #54 opened by imsuneth
2h 5m 23s dev-script
dev-script
2h 5m 23s
add script to compare freq bed with mmtsv C/C++ CI #421: Commit 1409d82 pushed by imsuneth
2h 9m 37s dev-script
dev-script
2h 9m 37s
add aggregated varfreq entry with * offset C/C++ CI #420: Commit 50ab506 pushed by imsuneth
2h 17m 23s dev
dev
2h 17m 23s
always emit offset column in varfreq/varview output, remove --inserti… C/C++ CI #419: Commit 1c92b09 pushed by imsuneth
2h 43m 35s dev
dev
2h 43m 35s
update offset to be offset from vcf_pos C/C++ CI #418: Commit b2f3b34 pushed by imsuneth
2h 13m 19s dev
dev
2h 13m 19s
add varfreq test dataset covering multiple variant types (SNP, INS, D… C/C++ CI #417: Commit ba62dc3 pushed by imsuneth
2h 31m 24s dev
dev
2h 31m 24s
script to compare two varfreq beds C/C++ CI #416: Commit 15f746f pushed by imsuneth
2h 6m 25s dev
dev
2h 6m 25s
add var related cols to outputs, fix insertion CpG matches C/C++ CI #415: Commit 5307615 pushed by imsuneth
2h 20m 32s dev
dev
2h 20m 32s
precompute CG positions for each variant, time improvement. clean code C/C++ CI #414: Commit ef90e99 pushed by imsuneth
2h 13m 58s dev
dev
2h 13m 58s
fix mem leak C/C++ CI #413: Commit f63d2a6 pushed by imsuneth
2h 20m 26s dev
dev
2h 20m 26s
add bedmethyl option for varview C/C++ CI #412: Commit 0930021 pushed by imsuneth
2h 12m 46s dev
dev
2h 12m 46s
add varfreq subtool with tests C/C++ CI #411: Commit 16d863d pushed by imsuneth
2h 20m 40s dev
dev
2h 20m 40s
fix varview false insertion matches C/C++ CI #410: Commit 31dad6b pushed by imsuneth
2h 14m 35s dev
dev
2h 14m 35s
fix bugs in varview subtool C/C++ CI #409: Commit dbb2085 pushed by imsuneth
2h 17m 30s dev
dev
2h 17m 30s
find cg contexts C/C++ CI #408: Commit bbf7ce0 pushed by imsuneth
2h 29m 6s dev
dev
2h 29m 6s
add initial code of varview subtool C/C++ CI #407: Commit 051d7a7 pushed by imsuneth
2h 29m 56s dev
dev
2h 29m 56s
update readme C/C++ CI #406: Commit 051853d pushed by imsuneth
2h 14m 10s main
main
2h 14m 10s