This pipeline is ran by upstream Gitlab nextflow_ci HGI repo https://gitlab.internal.sanger.ac.uk/hgi-projects/nextflow_ci/-/tree/cellranger_sbw .
It pulls cellranger data of @sbw experiments from google-spreadsheet list of sanger_sample_ids.
See inputs.nf in usptream repo.
See uptream repo branch template for instructions on how to run pipeline.
This repository was archived by the owner on Nov 5, 2025. It is now read-only.
wtsi-hgi/nextflow_ci
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