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Add support to build MOM5 with an external FMS and Generic Tracers using Spack #29

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harshula wants to merge 3 commits into from
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Add support to build MOM5 with an external FMS and Generic Tracers using Spack #29

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fca88c2
Include access/shared for all ACCESS build types
dougiesquire Apr 16, 2025
214fe0c
Allocate IOB arrays for nitrate and algae fluxes when -DCSIRO_BGC
dougiesquire Apr 17, 2025
52af340
Support building with external FMS and gtracers
dougiesquire Apr 28, 2025
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36 changes: 24 additions & 12 deletions exp/MOM_compile.csh
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Original file line number Diff line number Diff line change
Expand Up @@ -147,7 +147,11 @@ if ( ! -f $mppnccombine ) then
endif

set mkmf_lib = "$mkmf -f -m Makefile -a $code_dir -t $mkmfTemplate"
set lib_include_dirs = "$root/include $code_dir/shared/include $code_dir/shared/mpp/include"
if ( ! $?SPACK_GTRACERS_EXTERNAL ) then
set lib_include_dirs = "$root/include $code_dir/shared/include $code_dir/shared/mpp/include"
else
set lib_include_dirs = "$root/include $code_dir/shared/mpp/include"
endif

if ( $cosima_version ) then
echo "Including COSIMA version in build"
Expand All @@ -156,10 +160,14 @@ if ( $cosima_version ) then
set cppDefs = "$cppDefs -DCOSIMA_VERSION"
endif

# Build FMS.
source ./FMS_compile.csh

set includes = "-I$code_dir/shared/include -I$executable:h:h/lib_FMS -I$executable:h:h/lib_ocean"
if ( ! $?SPACK_GTRACERS_EXTERNAL ) then
echo "Building type=$type with internal FMS"
source ./FMS_compile.csh
set includes = "-I$code_dir/shared/include -I$executable:h:h/lib_FMS -I$executable:h:h/lib_ocean"
else
echo "Building type=$type with external FMS"
set includes = "-I$executable:h:h/lib_ocean"
endif

if ( $cosima_version ) then
set includes = "$includes -I$executable:h:h/lib_version/"
Expand Down Expand Up @@ -221,16 +229,16 @@ mkdir -p $executable:h
cd $executable:h
if( $type == MOM_solo ) then
set srcList = ( mom5/drivers )
set libs = "$executable:h:h/lib_ocean/lib_ocean.a $executable:h:h/lib_FMS/lib_FMS.a"
set libs = "$executable:h:h/lib_ocean/lib_ocean.a"
else if( $type == ACCESS-CM || $type == ACCESS-ESM) then
set srcList = ( access/accesscm_coupler )
set includes = "-I$executable:h:h/lib_FMS -I$executable:h:h/$type/lib_ocean"
set includes = "-I$executable:h:h/$type/lib_ocean"
set libs = "$executable:h:h/$type/lib_ocean/lib_ocean.a"
setenv OASIS true
else if( $type == ACCESS-OM || $type == ACCESS-OM-BGC) then
set srcList = ( access/accessom_coupler )
set includes = "-I$executable:h:h/lib_FMS -I$executable:h:h/$type/lib_ocean"
set libs = "$executable:h:h/$type/lib_ocean/lib_ocean.a $executable:h:h/lib_FMS/lib_FMS.a"
set includes = "-I$executable:h:h/$type/lib_ocean"
set libs = "$executable:h:h/$type/lib_ocean/lib_ocean.a"
else if( $type == MOM_SIS ) then
set srcList = ( coupler )
set includes = "$includes -I$executable:h:h/lib_ice -I$executable:h:h/lib_atmos_null -I$executable:h:h/lib_land_null"
Expand All @@ -256,12 +264,16 @@ else
exit 1
endif

if( $type == ACCESS-OM || $type == ACCESS-ESM) then
if( $type =~ ACCESS-* ) then
set srcList = ( $srcList access/shared )
endif

Comment thread
dougiesquire marked this conversation as resolved.
# Always include FMS
set libs = "$libs $executable:h:h/lib_FMS/lib_FMS.a"
if ( ! $?SPACK_GTRACERS_EXTERNAL ) then
set libs = "$libs $executable:h:h/lib_FMS/lib_FMS.a"
if( $type == ACCESS-CM || $type == ACCESS-ESM || $type == ACCESS-OM || $type == ACCESS-OM-BGC) then
set includes = "$includes -I$executable:h:h/lib_FMS"
endif
endif

if ( $cosima_version ) then
set libs = "$libs $executable:h:h/lib_version/lib_version.a"
Expand Down
8 changes: 7 additions & 1 deletion exp/ocean_compile.csh
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Expand Up @@ -9,7 +9,13 @@ if( $type == ACCESS-OM || $type == ACCESS-CM || $type == ACCESS-OM-BGC || $type
if( $type == ACCESS-OM-BGC ) then
set srcList = ( $srcList mom5/ocean_csiro_bgc )
else if ( $type == ACCESS-OM || $type == ACCESS-ESM ) then
set srcList = ( $srcList mom5/ocean_bgc access/generic_tracers/generic_tracers access/generic_tracers/mocsy/src )

if ( ! $?SPACK_GTRACERS_EXTERNAL ) then
set srcList = ( $srcList mom5/ocean_bgc access/generic_tracers/generic_tracers access/generic_tracers/mocsy/src )
else
set srcList = ( $srcList mom5/ocean_bgc )
endif

endif
mkdir -p $executable:h:h/$type/$lib_name
cd $executable:h:h/$type/$lib_name
Expand Down
9 changes: 9 additions & 0 deletions src/access/shared/gtracer_flux.F90
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Expand Up @@ -89,6 +89,11 @@ subroutine flux_exchange_init (Time, Ocean, Ocean_state, Ice_ocean_boundary, atm
#if defined(ACCESS_CM)
allocate(Ice_ocean_boundary%co2(isc:iec,jsc:jec))
#endif
#if defined(ACCESS_OM) && defined(CSIRO_BGC)
allocate( &
Ice_ocean_boundary%iof_nit(isc:iec,jsc:jec), &
Ice_ocean_boundary%iof_alg(isc:iec,jsc:jec))
#endif

Ice_ocean_boundary%u_flux = 0.0
Ice_ocean_boundary%v_flux = 0.0
Expand All @@ -115,6 +120,10 @@ subroutine flux_exchange_init (Time, Ocean, Ocean_state, Ice_ocean_boundary, atm
#if defined(ACCESS_CM)
Ice_ocean_boundary%co2 = 0.0
#endif
#if defined(ACCESS_OM) && defined(CSIRO_BGC)
Ice_ocean_boundary%iof_nit = 0.0
Ice_ocean_boundary%iof_alg = 0.0
#endif

! Spawn 2D Ocean%fields FMS coupler type from 1D gas_fields_ocn
call coupler_type_spawn(gas_fields_ocn, Ocean%fields, (/isc,isc,iec,iec/), &
Expand Down
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