Merge 2.4.0 changes from develop -> main - #474
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…removal Pva/evsrestapi 613 verify mapset removal
* EVSRESTAPI-619: url optional or invalid in validate-code operations and tests * EVSRESTAPI-619: spotless misc * EVSRESTAPI-619: value set expand op and code system lookup op and related tests * EVSRESTAPI-619: remove unneeded tests regarding param url/system * Update build.gradle
* EVSRESTAPI-622: FHIR R5 conceptmap translate fixes and new and improved tests * EVSRESTAPI-622: spotless stuff
…a-medrt Evsrestapi 627 update unittestdata medrt
* EVSRESTAPI-623: FhirR*ClientSDKTests and associated github Postman.json retrieval * EVSRESTAPI-623: spotless and misc * EVSRESTAPI-621: valueset performance optimizations
…tdata-medrt Pva/evsrestapi 628 update unittestdata canmed
#376) * EVSRESTAPI-620: update parameter setting on valueset expands endpoints * EVSRESTAPI-620: update parameter setting on valueset expands endpoints * EVSRESTAPI-620: all valueset expand params; fix for total * some cleanup * spotless formatting --------- Co-authored-by: Brian Carlsen <bcarlsen@westcoastinformatics.com>
* EVSRESTAPI-623: FhirR*ClientSDKTests and associated github Postman.json retrieval * EVSRESTAPI-623: spotless and misc
* EVSRESTAPI-558: Assert/Assertion compile issue * EVSRESTAPI-558: initial work toward setting fhir dates * EVSRESTAPI-558: fhir dates testing * EVSRESTAPI-558: move date formatting to FhirUtility * EVSRESTAPI-558: ValueSet date settings and related tests * EVSRESTAPI-558: spotless updates * EVSRESTAPI-558: spotless apply
…e the email from the form (#460)
* Set version to 2.4.0 * EVSRESTAPI-681: avoid re-running for the same terminology (#428) * Dss/evsrestapi 634 search modifiers (#429) * EVSRESTAPI-636: spotless misc * EVSRESTAPI-634: uri search modifiers and string missing search modifiers * fix string -> integer * EVSRESTAPI-678 * spotless * Dss/evsrestapi 634 search modifiers (#431) * EVSRESTAPI-636: spotless misc * EVSRESTAPI-634: uri search modifiers and string missing search modifiers * EVSRESTAPI-634: same search modifiers for R4 * EVSRESTAPI-634: spotless misc * most changes, need to filter remodeled properties * ignore remodeled properties * spotless fix * more thorough test * EVSRESTAPI-679: nci term forms attachment and tests for ncit (refactor for cdisc) (#434) * Dss/evsrestapi 671 prefix docs (#435) * EVSRESTAPI-671: sparql prefix documentation * EVSRESTAPI-671: spotless misc. * [EVSRESTAPI-677] Fix issue with TermSuggestionFormControllerTests (#432) * [EVSRESTAPI-574] Improve handling of the triplestore databases - NCIT2, CTRP * [EVSRESTAPI-677] Fix issue with TermSuggestionFormControllerTests * [EVSRESTAPI-677] Fix issue with TermSuggestionFormControllerTests * EVSRESTAPI-679: nci term forms attach (#436) * Dss/evsrestapi 689 todos (#443) * EVSRESTAPI-689: GraphReportLoadServiceImpl.java log hierarchy info * EVSRESTAPI-689: removing TODOs; some minor test adjustments * EVSRESTAPI-689: resolve more todos * EVSRESTAPI-689: more notes * spotless misc * Dss/evsrestapi 690 property param adding property parameter for CodeSystem$lookup operation * migrate ObjectMapper to ThreadLocalMapper * fix what tests i can * EVSRESTAPI-671: sparql prefix related documentation (#439) * EVSRESTAPI-671: sparql prefix related documentation * Fix formatting --------- Co-authored-by: Brian Carlsen <bcarlsen@westcoastinformatics.com> * spotbugs * various bugfixes from spotbugs * fix filepath * fix spotbugs in make build * fix some spotbug stuff * fix compile error * EVSRESTAPI-696, EVSRESTAPI-700: reindex.sh cleanup, and update chebi data file to 247 and handle data type (#447) * fix last spotbugs * [EVSRESTAPI-574] Improve handling of the triplestore databases - NCIT2, CTRP (#421) * [EVSRESTAPI-574] Improve handling of the triplestore databases - NCIT2, CTRP * Make build * [EVSRESTAPI-574] Improve handling of the triplestore databases - NCIT2, CTRP --------- Co-authored-by: Brian Carlsen <bcarlsen@westcoastinformatics.com> * [EVSRESTAPI-680] Investigate indexing performance on dev/qa (#448) * Dss/evsrestapi 690 property param (#450) * EVSRESTAPI-690: property parameter adding property parameter for CodeSystem$lookup operation * EVSRESTAPI-690: property param spotless misc * EVSRESTAPI-690: property param update .gitignore * EVSRESTAPI-690-property-param * EVSRESTAPI-690: spotless misc * updates to scripts for new ncit * some test fixes for versions/other changes in current ncit * EVSRESTAPI-700: add curl calls to remove indexes to reindex.sh * fix some more tests * Fixes for term form tests * add versions to some tests for ncit * not safe to assume order of versions * update ncit samples * [EVSRESTAPI-702] Loader fails when history file is not passed (#451) * basic audit * all type report + output to csv/tsv * standardize UnitTestData folders/filenames * forgot to change a couple of things * patch filepaths again * update output for readability * compress no records warning logic * exit with error message on failed ES call * extend options and make help command better * partial word searches boost * cleanup * regex tweaks * consolidate code * spotless * comments * UPdate jackson vulnerability --------- Co-authored-by: Deborah Shapiro <dshapiro@westcoastinformatics.com> Co-authored-by: peter-va <pvanaus@ucdavis.edu> Co-authored-by: Peter Van Ausdeln <pvanausdeln@westcoastinformatics.com> Co-authored-by: akuppusamy-wci <99685732+akuppusamy-wci@users.noreply.github.com>
…roles PVA/EVSRESTAPI-581: add grouping to ncit roles
…ests were included here as well (#465)
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