Merge 2.4.0 changes from develop -> main - #474

Merged

bcarlsenca merged 1306 commits into

mainfrom

May 7, 2026

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Commits on Jun 19, 2025

EVSRESTAPI-625: fix issue with swagger baseUrl (#379)
bcarlsenca
authored
dd919a1

Commits on Jun 20, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
1c650d6

Commits on Jun 21, 2025

FIX swagger for FHIR to allow the public URL to be the server-side "base url" (#380)
bcarlsenca
authored
2d0b5f2
Merge pull request #377 from NCIEVS/PVA/EVSRESTAPI-613-verify-mapset-removal
peter-va
authored
89eefeb

Commits on Jun 23, 2025

Dss/evsrestapi 619 instance url param (#378)
shapirod2
authored
8ec5f61

Commits on Jun 24, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
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17c6c73

Commits on Jun 25, 2025

change filename for medrt devreset
peter-va
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f081a8f
fix test for new version
peter-va
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52fac32

Commits on Jun 26, 2025

Add comments for cacheMills = 0
bcarlsenca
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a615b6b

Commits on Jun 27, 2025

CLEANUP: ensure urls are available with resource providers
bcarlsenca
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c1acc47
Merge branch 'develop' into develop-2.3
bcarlsenca
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d5a9ef5
Spotless formatting
bcarlsenca
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6ac9b11

Commits on Jun 30, 2025

sampling and test fixes
peter-va
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1a900ad
change devreset link
peter-va
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f52f3f0
Dss/evsrestapi 622 conceptmap translate (#381)
shapirod2
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a187536
Merge pull request #382 from NCIEVS/EVSRESTAPI-627-update-unittestdata-medrt
peter-va
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ab78700
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-628-update-unittestdata-medrt
peter-va
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35823b8

Commits on Jul 2, 2025

Dss/evsrestapi 621 valueset performance (#385)
shapirod2
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3036a1c

Commits on Jul 3, 2025

Merge pull request #383 from NCIEVS/PVA/EVSRESTAPI-628-update-unittestdata-medrt
peter-va
authored
e021fc6
EVSRESTAPI-620: update parameter setting on valueset expands endpoints (#376)

shapirod2
and
bcarlsenca
authored
66cd98a
Dss/evsrestapi 623 fhir clientsdk tests (#384)
shapirod2
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3261ed5
Dss/evsrestapi 558 fhir dates (#386)
shapirod2
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a9ca0d7
change to new filename
peter-va
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0770b07
update file refs in devreset and load.sh
peter-va
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93070c7

Commits on Jul 4, 2025

Merge branch 'develop-2.3' into PVA/EVSRESTAPI-631-update-unittestdata-hgnc
peter-va
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8ad6ec3

Commits on Jul 7, 2025

fix a couple issues with -d
peter-va
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0b757f7
CLEANUP: warnings and formatting
bcarlsenca
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7714713

Commits on Jul 8, 2025

fix canmed devreset
peter-va
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51ce6b3
fix load canmed
peter-va
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5997eab
edit hgnc sample test
peter-va
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7489f02
add default cumulative history
peter-va
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Merge branch 'PVA/EVSRESTAPI-631-update-unittestdata-hgnc' into PVA/EVSRESTAPI-630-update-unittestdata-go
peter-va
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687c539
change filename
peter-va
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a7ff33c
edit sample test
peter-va
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5f06db0

Commits on Jul 9, 2025

edit sampling for go
peter-va
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895a547
edit filename for chebi
peter-va
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5e11617
fix chebi sample tests
peter-va
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f1ca587
Merge pull request #387 from NCIEVS/PVA/EVSRESTAPI-631-update-unittestdata-hgnc
peter-va
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d143ad0
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-630-update-unittestdata-go
Peter Van Ausdeln
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07b9b4c
Merge pull request #388 from NCIEVS/PVA/EVSRESTAPI-630-update-unittestdata-go
peter-va
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adef7e2
Merge pull request #389 from NCIEVS/PVA/EVSRESTAPI-629-update-unittestdata-chebi
peter-va
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0b3f417
EVSRESTAPI-636: swagger link fix (#390)
shapirod2
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a29d6cb
CLEANUP: imports and small efficiency thing
bcarlsenca
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f45de80
Merge branch 'develop-2.3' of github.com:NCIEVS/evsrestapi into develop-2.3
bcarlsenca
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1e96452

Commits on Jul 11, 2025

Dss/evsrestapi 626 conceptmap date (#391)
shapirod2
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af3fff3

Commits on Jul 13, 2025

move to searchable
peter-va
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73b8b55
remove reliance on localhost running in local reindex
peter-va
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4e791c2
reconcile graphdb/elasticsearch in reindex
peter-va
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ea99307

Commits on Jul 14, 2025

tweaks
peter-va
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Dss/evsrestapi 626 conceptmap date (#394)
shapirod2
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f8e5218
Merge pull request #392 from NCIEVS/PVA/EVSRESTAPI-639-move-ncit-maps-into-viewable
peter-va
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ff22ba7
Merge pull request #393 from NCIEVS/PVA/EVSRESTAPI-573-reconcile-graphdb-in-reindex
peter-va
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da18fd6
change locations for consistency
peter-va
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fdd50c8
new samples
peter-va
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01d3dda
change message in reindex
peter-va
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e20790a
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
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24d0801
fix merge issue with develop-2.3
peter-va
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2e8581b
change filenames
peter-va
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d13710d

Commits on Jul 15, 2025

partial test change
peter-va
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3a7b434
remove logging
peter-va
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4411700
fix some tests based on terminology version
peter-va
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ba48395
spotless stuff
Peter Van Ausdeln
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bda57fd
fix a test
peter-va
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189cfe9
Merge branch 'PVA/EVSRESTAPI-632-update-unittestdata-ncit' of https://github.com/NCIEVS/evsrestapi into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
9a6dd36
fix a few more tests
peter-va
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046e96c
fix more tests
peter-va
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4474f47

Commits on Jul 16, 2025

add history file
peter-va
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2959a83
add test cases for childhood neoplasm and change index to update
peter-va
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dc37cd6
Add childhood neoplasm test
bcarlsenca
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0125ad4

Commits on Jul 17, 2025

Merge branch 'PVA/EVSRESTAPI-642-fix-normname-processing-in-history-childhoodneoplasm' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
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b7459fe
edits to ncit samples
peter-va
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00b5adc
exclude synonyms from update
peter-va
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2d42fe5
fix tests
peter-va
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75c87d2

Commits on Jul 18, 2025

add more fix to WriteOnlyProperty issues
peter-va
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de49c34
tune the fields that we're using WriteOnlyProperties for
peter-va
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ce6228e
fix WriteOnlyProperties being removed on reindexing concepts
peter-va
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c0788d3
tweak test
peter-va
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3c3b133

Commits on Jul 21, 2025

Commits on Jul 22, 2025

change tests to work with configs set
peter-va
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f519ac7
escape hatch env var
Peter Van Ausdeln
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24846be
add one more test to the config checking
Peter Van Ausdeln
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5e30b9f
EVSRESTAPI-642: small test fixes
bcarlsenca
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49d3fe8
add more tests
Peter Van Ausdeln
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9f95aa3
some of these tests aren't actually integration tests
peter-va
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3a2b8aa
tests don't do anything because of the mock bean, removing
peter-va
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952ffcb
revert last bit of those tests
peter-va
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Commits on Jul 23, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
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f48a286
fix filepaths
peter-va
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eec4eb3
syntax error
peter-va
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b28f5ec
remove writeonlyproperty + add test
peter-va
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04aee63
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-643-review-writeonlyproperty
peter-va
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c6d9d99
edit how the config checker works based on env variables
peter-va
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f231e31
tweaks from feedback
peter-va
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2c4bfd4

Commits on Jul 25, 2025

Dss/evsrestapi 620 valueset expand tests (#397)
shapirod2
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84d8d13
EVSRESTAPI: update canmed testing version (#396)
shapirod2
authored
30e177d

Commits on Jul 28, 2025

Merge pull request #401 from NCIEVS/PVA/EVSRESTAPI-643-review-writeonlyproperty
peter-va
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212be0c
add sourceTerminologyVersion for all mappings
peter-va
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fa28b15

Commits on Jul 29, 2025

add filepaths for welcomeText
Peter Van Ausdeln
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38008e6

Commits on Jul 30, 2025

Commits on Jul 31, 2025

bail on integration tests when configs not set
peter-va
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9205608
remove GDC-specific sentence
peter-va
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07c11ec
some changes to loading metadata for non-indexed mappings
peter-va
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f57e50b
Small fixes for UnitTestData alignment
bcarlsenca
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f1937e2

Commits on Aug 1, 2025

EVSREsTAPI-651: ensure mapset loader handles first line properly (#404)
bcarlsenca
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cbb3ae5
add test for ncit_maps_to properties
peter-va
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ae3f2f9

Commits on Aug 2, 2025

Merge pull request #405 from NCIEVS/PVA/EVSRESTAPI-548-sourceTerminologyVersion
peter-va
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c88cfb0

Commits on Aug 4, 2025

Commits on Aug 5, 2025

Fix to support running reindexing in a shell on the mac
bcarlsenca
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3876c98
Merge branch 'develop' into develop-2.3
bcarlsenca
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684a22f

Commits on Aug 6, 2025

fix some sample tests
peter-va
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078a41c

Commits on Aug 7, 2025

some fixes to indexing
peter-va
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4f78881

Commits on Aug 8, 2025

single out owl:deprecated to support new chebi
peter-va
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5094ab6

Commits on Aug 12, 2025

EVSRESTAPI-407: prep data for 202508 NCIM sample
bcarlsenca
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f791792
fix file
bcarlsenca
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748f2ae
fix cuis files
bcarlsenca
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dce2585

Commits on Aug 15, 2025

fix unit test data pathing
peter-va
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71b7305
edit qualifier model to show code
peter-va
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3254c12
edit indexing to add code to qualifiers
peter-va
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9d71c05
clear out more removing-code lines
peter-va
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779c9d8

Commits on Aug 18, 2025

add test for viewable qualifier codes
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2ba967b
spotless
peter-va
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2ffdf5e
one more qualifier code check
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5616790

Commits on Aug 19, 2025

remove unused clearHidden functions
peter-va
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780028b
add qualifier sample to ncit.txt
peter-va
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b6c7c80
Merge pull request #406 from NCIEVS/PVA/EVSRESTAPI-641-update-for-new-chebi
peter-va
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45c71e7
Merge branch 'bac/EVSRESTAPI-407-ncim-update' into pva/EVSRESTAPI-407-update-unittestdata-ncim
peter-va
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e97db02
sort metadata by code default
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spotless
peter-va
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tests for metadata sort by code
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f3a468b

Commits on Aug 20, 2025

second ncim reset to update terminology
peter-va
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4814d9b
fix some mdr tests
peter-va
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fdaece1

Commits on Aug 22, 2025

EVSRESTAPI-407: handling part of NCIM update (#407)
bcarlsenca
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2c6963c
Merge branch 'master' into develop
bcarlsenca
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07444a0
Merge pull request #409 from NCIEVS/develop-2.3
bcarlsenca
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b804526

Commits on Aug 26, 2025

EVSRESTAPI-407: fixes for RRF sampling to better handle tty ranks
bcarlsenca
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1f33daa
update ncim sampler
peter-va
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407cdd2
Fix nocode issues
bcarlsenca
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143a18b

Commits on Aug 27, 2025

too long to properly check
peter-va
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36eb32f
improvements
bcarlsenca
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df198a6
add comment
bcarlsenca
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e56c3a9
Update devreset to match the files generated for NCIM/NCIM2
bcarlsenca
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7117d2c
Merge pull request #408 from NCIEVS/PVA/EVSRESTAPI-494-default-metadata-sort
peter-va
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5129e4b
fix vulnerability
peter-va
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e73d069
Merge pull request #410 from NCIEVS/bac/EVSRESTAPI-407-rrf-sampling
peter-va
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a91dc38
Merge branch 'develop' into PVA/EVSRESTAPI-407-update-unittestdata-ncim
peter-va
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39ef030

Commits on Aug 28, 2025

fix mged crash on reindex in roles
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640d2d7
remove logging
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e5dbc53

Commits on Aug 29, 2025

Merge pull request #413 from NCIEVS/PVA/EVSRESTAPI-665-mged-crashing-reindex-roles
peter-va
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be9f8d7
ignore rrf roots for now
peter-va
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9c8e9bb
clean up mdr tests
peter-va
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a0e2d32
cleaned up sample tests
peter-va
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21fa76a
more fixed terminologies
peter-va
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8a97c92
fix test
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more fixed terminologies
peter-va
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b3a76b5
spotless
peter-va
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8cb4a04

Commits on Sep 5, 2025

Dss/evsrestapi 640 valueset post mode (#399)

authored
032f105
Dss/evsrestapi 658 sort param (#412)

shapirod2
and
claude
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b8b4cfa
EVSRESTAPI-407: fixes for NCIM sampling
bcarlsenca
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ec35947
Merge branch 'develop' of github.com:NCIEVS/evsrestapi into develop
bcarlsenca
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aae9587

Commits on Sep 9, 2025

EVSRESTAPI-596: improvements to handling stale and update flags
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855b055
bulk index and wait
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c94cc76
spotless
bcarlsenca
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08c78c0
add more changes and samples
peter-va
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7f45281
Merge branch 'PVA/EVSRESTAPI-407-update-unittestdata-ncim' into bac/EVSRESTAPI-596-reconcile-latest
bcarlsenca
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0014241
Merge pull request #411 from NCIEVS/PVA/EVSRESTAPI-407-update-unittestdata-ncim
peter-va
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8278c45
Merge branch 'develop' into bac/EVSRESTAPI-596-reconcile-latest
bcarlsenca
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e6aa855
Update version to 2.3.0
bcarlsenca
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4a700bf
fix icd9cm sampling
peter-va
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add comment to icd9cm
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fb23074
fix pdq and icd10
peter-va
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c58a83c
spotless
peter-va
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09afc08

Commits on Sep 12, 2025

Commits on Sep 15, 2025

EVSRESTAPI-596: improvements to reconcile latest
bcarlsenca
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933aae6

Commits on Sep 17, 2025

Merge pull request #417 from NCIEVS/bac/owl-deprecated-fix
bcarlsenca
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3d84987

Commits on Oct 1, 2025

Update CDISC form
bcarlsenca
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a3c96b7
Update CDISC form
bcarlsenca
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e3437da

Commits on Oct 3, 2025

Pva/evsrestapi 465 term form file attachment (#419)
peter-va
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c50054a
Dss/evsrestapi 661 ctcae6 load (#418)

shapirod2
and
claude
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19ff5f2
EVSRESTAPI-465: Finishing work on term form testing (#420)
bcarlsenca
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7ca89de

Commits on Oct 7, 2025

Commits on Oct 10, 2025

Dss/evsrestapi 664 improved partial searches (#416)
shapirod2
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97e757d
EVSRESTAPI-465: fix term form api paths
bcarlsenca
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db13ade
Update swagger to 5.18.2
bcarlsenca
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515c087

Commits on Oct 17, 2025

Changes to get tests passing (#422)
bcarlsenca
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1419f46

Commits on Oct 21, 2025

fix some tests
peter-va
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7631e94
fix last two tests
peter-va
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6a5ea74
fix most controller tests
peter-va
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95d36ec

Commits on Oct 22, 2025

fix last test with reflection
peter-va
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158f401
remove logs
peter-va
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eb84666

Commits on Oct 29, 2025

Dss/evsrestapi fhir test mods (#424)
shapirod2
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1e190ec

Commits on Oct 30, 2025

Merge pull request #423 from NCIEVS/PVA/fix-termform-tests
peter-va
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ef201eb

Commits on Nov 4, 2025

Work to get all tests passing. (#425)
bcarlsenca
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2b0a97c
Final changelog updates
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c10676a
CLEANUP: remove errant log entry
bcarlsenca
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53e0bad

Commits on Nov 5, 2025

EVSRESTAPI-664: adjust scoring for 'bone cancer'
bcarlsenca
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4e8d053
Small fix to clear 'extraSubsets' in terminology metadata
bcarlsenca
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9c8ca19
Add an exact query match (#426)
bcarlsenca
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9779d27

Commits on Nov 6, 2025

unhide extensions in concept (#427)
peter-va
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fd2a82a

Commits on Dec 4, 2025

Fix vulnerability in org.opensearch:opensearch-common (#438)
bcarlsenca
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1ae4188

Commits on Dec 5, 2025

EVSRESTAPI-677: Improve Term Form to use better error messages (#437)
peter-va
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2f57eb2
Update Changelog
bcarlsenca
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6809b7a

Commits on Dec 9, 2025

remove some term form requirements
peter-va
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5755b3e
remove now-invalid test
peter-va
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085efb0
Merge pull request #440 from NCIEVS/PVA/EVSRESTAPI-remove-term-form-requirements
peter-va
authored
9f1fdaa

Commits on Dec 12, 2025

EVSRESTAPI-697: small change to handle chebi decimal version (#441)
bcarlsenca
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30b3837

Commits on Dec 16, 2025

EVSRESTAPI-697: Fix duplicate maps now that NCIt maps are both viewable and attached to concepts (#442)
bcarlsenca
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4390c56

Commits on Dec 18, 2025

Commits on Dec 29, 2025

EVSRESTAPI-700: Improve remove unused indexes agorithm (#446)
bcarlsenca
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9595e9f

Commits on Jan 7, 2026

Commits on Feb 6, 2026

NCIM: bump memory for ncim-part.sh for 202602
bcarlsenca
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d688cac

Commits on Feb 18, 2026

RDFBROWSER-586: Better handling of mapping source/target terminology names (#458)
bcarlsenca
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ffe2879

Commits on Feb 20, 2026

EVSRESTAPI-708: support default blank 'mailRecipient' property and use the email from the form (#460)
bcarlsenca
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ff39e09

Commits on Mar 3, 2026

Merge 2.4.0 changes into develop (#462)

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900edf5

Commits on Mar 23, 2026

add grouping to ncit roles
peter-va
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7066763
edits from feedback
peter-va
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0368947
add negative case to test
peter-va
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9cdd6f3
spotless
peter-va
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ac72ca6
Fix vulnerabilities in FHIR libraries
bcarlsenca
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a40a710
Merge branch 'develop' into PVA/EVSRESTAPI-581-grouping-ncit-roles
peter-va
committed
d022547

Commits on Mar 27, 2026

rework sparql queries for equivalent classes
peter-va
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b708840
remove concept logging
peter-va
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f9b6cb5
additions to role grouping test
peter-va
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b6736de
spotless
peter-va
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ae7e85f
small trivy scan refactor
peter-va
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dbca2c6

Commits on Mar 29, 2026

address github security warning
peter-va
committed
2bca478

Commits on Apr 1, 2026

Commits on Apr 3, 2026

Fix issues with use of file-based-map
bcarlsenca
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d83125a

Commits on Apr 6, 2026

Fix issues with use of file-based-map
bcarlsenca
committed
3a19cd6

Commits on Apr 7, 2026

All tests passing for 2.4.0 (#467)
bcarlsenca
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d43e484

Commits on Apr 8, 2026

EVSRESTAPI-614: Update CHANGELOG.md to align with releases creation
bcarlsenca
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bfc5cd2

Commits on Apr 21, 2026

Commits on Apr 24, 2026

Initial AGENTS.md file
bcarlsenca
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1da48ba

Commits on Apr 27, 2026

Minor version upgrades for vulnerabilities
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fed0ab6

Commits on May 7, 2026

Merge branch 'master' into develop
bcarlsenca
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e6f8fb4