Search results

AssertionError in H5adToZarr.dump: not all cells written to Zarr

Status: Open.

#148 In NygenAnalytics/scarf;

· ulvelind opened on Feb 16, 2026

Paris clustering does not converge

Status: Open.

#142 In NygenAnalytics/scarf;

· KSimi7 opened on Jul 17, 2025

Zarr > 2.16.0 breaks Scarf on S3

Status: Open.

#139 In NygenAnalytics/scarf;

· oskbor opened on Jan 16, 2025

Support for BD formatted mtx files

Status: Open.

#126 In NygenAnalytics/scarf;

· oskbor opened on Oct 1, 2024

Scarf core package

Status: Open.

#120 In NygenAnalytics/scarf;

· oskbor opened on Aug 14, 2024

error at step: ds.plot_marker_heatmap

Status: Open.

#117 In NygenAnalytics/scarf;

· JelenaKrneta opened on Jun 25, 2024

Categorical keys are not imported when converting from H5ad to Zarr

Status: Open.

#116 In NygenAnalytics/scarf;

· rpadmanabhan opened on Jun 18, 2024

Error in conversion from AnnData to Zarr

Status: Open.

#112 In NygenAnalytics/scarf;

· stefraptis opened on Dec 4, 2023

Allow mapping using gene names

Status: Open.

#107 In NygenAnalytics/scarf;

· Sagva opened on Oct 12, 2023

Typos and small documentation improvements

Status: Open.

#103 In NygenAnalytics/scarf;

· hi-ilkin opened on Aug 18, 2023

ZarrMerge behaves weirdly

Status: Open.

#102 In NygenAnalytics/scarf;

· hi-ilkin opened on Aug 16, 2023

pip installation fails with this ERROR: Could not install packages due to an OSError: [Errno 30] Read-only file system: '/opt/python/3.9.14/lib/python3.9/site-packages/texttable.py'

Status: Open.

#90 In NygenAnalytics/scarf;

· bioarpit1 opened on Apr 28, 2023