docs: shareable science projects — fork/clone-and-continue + open-source-your-paper emphasis#46
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…, paper-companion emphasis (#45) The generated project gains its missing README.md front door (reproduce / continue-this-work / data-availability placeholder / citation); Collaborate now opens with built-to-be-shared and spells out a collaborator's fork-and- continue first session via refer-back; Publish frames the public repo as the paper's open-source companion; the top-level README pitches both, with new share/publish example prompts. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
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Closes #45.
Summary
Adds the missing user-facing emphasis that a science project is built to be shared: a collaborator forks or clones the project repo and continues the work with their own
autolens_assistant, and the same repo is the natural open-source companion to the paper (data or its availability statement, results, every python script).README.mdtemplate (previously missing — the Publish gate referenced a README that Create never scaffolded): Reproduce this analysis / Continue this work (fork or clone + assistant refer-back via$AUTOLENS_ASSISTANT→ sibling → clone-on-demand) / Data availability placeholder / Citation.README.md: "Built to be shared" pitch in the Science Project section + a new share-with-collaborator example prompt + sharpened publish prompt (DOI included).description:gains "continue a collaborator's project" and "open-source the repo that goes with my paper" triggers.Scripts Changed
None — documentation only (
README.md,skills/start-new-project.md). No scripts, notebooks, or configs touched.Validation
autoassistant/audit_skill_apis.py --check-citations: 90 files, 388 citations, 0 missing paths, 0 warnings.Readiness
Heart YELLOW on the standing 6-reason set (repeatedly human-acked in-session 2026-07-10); no new reasons; docs-only change to a repo not on the library release train (no
pending-releaselabel exists here — deliberate).Absorbs the retired PyAutoMind prompt
science_project_collaborator_clone.md.🤖 Generated with Claude Code