feat: per-project literature — project-local bibliography with deliberate upstream promotion#50
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…i on promotion only (#49) Create scaffolds wiki/project/bibliography.md (hybrid rule in its header: analysis-specific papers live in the project, general concepts refer back to the shared wiki); thin AGENTS.md gains a Literature bullet; al_ingest_paper gains a target-selection step — project-local default inside a science project (canonical key reused read-only when known), shared wiki/literature/ only from the assistant clone or on explicit promotion (verbatim section copy + canonical .bib/sources/log/validate-citations). Guided paper-intake at creation stays deferred/evidence-gated per the prompt. Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
This was referenced Jul 10, 2026
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Closes #49.
Summary
Implements the hybrid literature rule for science projects:
wiki/project/bibliography.md— the project-local literature home, one##section per paper in the same shape as the sharedsources/*.md(so promotion upstream is a verbatim copy); public arXiv/DOI refs only, never PDF paths. Hybrid rule stated once in its header.AGENTS.mdgains a Literature bullet: general concepts → sharedwiki/literature/via refer-back (one source of truth); analysis-specific papers → the project page.al_ingest_papergains a "Target — project-local or shared?" step: inside a project (detected viaproject.yaml+ refer-backAGENTS.md) the default is the project page, with read-only canonical-key reuse; the shared wiki flow (canonical.bib,sources/,log.md,validate-citations) runs only in the assistant clone or on explicit promotion. Frontmatter description + skills README updated.The deferred guided paper-intake step at project creation stays evidence-gated (recorded on #49), per the prompt.
Scripts Changed
None — documentation/skill templates only (
skills/al_ingest_paper.md,skills/start-new-project.md,skills/README.md).Validation
--check-citations: 90 files, 388 citations, 0 missing, 0 warnings.Readiness
Heart YELLOW on the standing 6-reason set only (human-acked repeatedly 2026-07-10); docs-only, not on the library release train.
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