Skip to content

fixed bug where CompCCAT would fail if exp.m is of class dgeMatrix #6

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
nickhir wants to merge 1 commit into
base: master
Choose a base branch
from
Open

fixed bug where CompCCAT would fail if exp.m is of class dgeMatrix #6

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions R/CompCCAT.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -69,8 +69,10 @@ CompCCAT <- function(exp.m, ppiA.m){

if(classMATRIX=="matrix"){ ## ordinary matrix
ccat.v <- as.vector(cor(exp.m[match(commonEID.v,rownames(exp.m)),],k.v));
}
else if (classMATRIX=="dgCMatrix"){
} else if (classMATRIX=="dgeMatrix"){ # ordinary dense matrix in S4 Matrix representation.
exp.m <- as.matrix(exp.m) # dense S4 matrix representation to base matrix presentation
ccat.v <- as.vector(cor(exp.m[match(commonEID.v,rownames(exp.m)),],k.v))
} else if (classMATRIX=="dgCMatrix"){
ccat.v <- as.vector(corSparse(exp.m[match(commonEID.v,rownames(exp.m)),],Matrix(matrix(k.v,ncol=1))));
}

Expand Down