fixed bug where CompCCAT would fail if exp.m is of class dgeMatrix - #6
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nickhir wants to merge 1 commit into
Open
fixed bug where CompCCAT would fail if exp.m is of class dgeMatrix#6nickhir wants to merge 1 commit into
nickhir wants to merge 1 commit into
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As mentioned in issue #5 ,
CompCCATthrows an error if the class ofexp.misdgeMatrix.I assume users might run into this issue, if they log transform their data with
scater::logNormCounts(sce_tx22)and add the argumentpseudo.count = 1.1to avoid 0 values as is mentioned in the vignette. Its easy to miss that you are usinglscChu0.mwhen estimating the differentiation potency.My fix simply transform the
dgeMatrixto a base Rmatrixand then everything works as intended.