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Jnj templates scripts 5 true positive #225

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2b6433d
change: spurious change to tsids01 to test true positive rtf diffs
munoztd0 Mar 6, 2026
b209e46
[skip style] [skip vbump] Restyle files
github-actions[bot] Mar 6, 2026
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9 changes: 6 additions & 3 deletions tests/testthat/source_code/lsfecg02.R
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Original file line number Diff line number Diff line change
Expand Up @@ -210,7 +210,8 @@ result1 <- result %>%

colwidth <- c(21, 13, 18, 38, 75, 15, 50, 24, 15, 14)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
head(result1, 100),
file = paste0(fileid, "PART1OF3"),
orientation = "landscape"
Expand All @@ -221,7 +222,8 @@ result2 <- result %>%

colwidth <- c(21, 13, 18, 29, 74, 27, 50, 24, 15, 14)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
head(result2, 100),
file = paste0(fileid, "PART2OF3"),
orientation = "landscape"
Expand All @@ -232,7 +234,8 @@ result3 <- result %>%

colwidth <- c(18, 13, 18, 41, 75, 16, 50, 24, 15, 14)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
head(result3, 100),
file = paste0(fileid, "PART3OF3"),
orientation = "landscape"
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/lsfvit02.R
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Original file line number Diff line number Diff line change
Expand Up @@ -200,7 +200,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(21, 13, 18, 31, 74, 18, 50, 26, 15, 19)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
head(result, 100),
file = paste0(fileid),
orientation = "landscape"
Expand Down
2 changes: 1 addition & 1 deletion tests/testthat/source_code/lsids04.R
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Original file line number Diff line number Diff line change
Expand Up @@ -97,6 +97,6 @@ result <- set_titles(result, tab_titles)
# Output listing
###############################################################################

colwidth <- c(21, 13, 18,23)
colwidth <- c(21, 13, 18, 23)

tt_to_tlgrtf(colwidths = colwidth, head(result, 100), file = fileid, orientation = "landscape")
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae21a.R
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Original file line number Diff line number Diff line change
Expand Up @@ -303,7 +303,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 21, 21, 21, 21, 17, 23, 21, 21, 17, 21, 21, 19, 17)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "portrait",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae21b.R
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Original file line number Diff line number Diff line change
Expand Up @@ -329,7 +329,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 17, 19, 17, 21, 21, 21, 17, 17, 17, 21, 19, 23, 17, 19, 17, 21, 21, 21, 17, 17, 17, 17, 17)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae21c.R
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Original file line number Diff line number Diff line change
Expand Up @@ -232,7 +232,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 23, 21)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "portrait",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae21d.R
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Original file line number Diff line number Diff line change
Expand Up @@ -246,7 +246,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 23, 21)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "portrait",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae22a.R
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Original file line number Diff line number Diff line change
Expand Up @@ -295,7 +295,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 21, 23, 21, 21, 19, 19, 19, 21, 21, 21, 19, 21, 21, 21, 19, 19, 19, 21)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "portrait",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae22b.R
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Original file line number Diff line number Diff line change
Expand Up @@ -281,7 +281,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 21, 21, 21, 21, 23, 21, 21, 21, 21, 21)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "portrait",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae22c.R
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Original file line number Diff line number Diff line change
Expand Up @@ -273,7 +273,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 21, 23, 21, 21, 21, 21, 23, 23, 21, 21, 21, 19, 21, 21)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "portrait",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae24d.R
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Original file line number Diff line number Diff line change
Expand Up @@ -203,7 +203,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 21, 21, 21, 23, 21, 21, 21)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfae24f.R
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Original file line number Diff line number Diff line change
Expand Up @@ -247,7 +247,8 @@ result <- set_titles(result, tab_titles)

colwidth <- c(64, 21, 17, 21, 19, 21, 23, 21, 21, 21, 21, 21, 19, 21, 19, 17, 19, 21, 19)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfecg01.R
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Original file line number Diff line number Diff line change
Expand Up @@ -353,7 +353,8 @@ result <- set_titles(result, titles)

colwidth <- c(56, 29, 36, 39, 29, 36, 41, 29, 36, 37, 41, 41)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
nosplitin = list(cols = c(trtvar, "rrisk_header")),
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfecg01a.R
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Original file line number Diff line number Diff line change
Expand Up @@ -439,7 +439,8 @@ result <- set_titles(result, titles)

colwidth <- c(56, 29, 36, 41, 29, 36, 41, 29, 36, 41, 41, 41)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
nosplitin = list(cols = c(trtvar, "rrisk_header")),
Expand Down
16 changes: 9 additions & 7 deletions tests/testthat/source_code/tsflab01.R
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Original file line number Diff line number Diff line change
Expand Up @@ -565,7 +565,8 @@ build_result_parcat3 <- function(
### add the proper abbreviation to the tblid, and add opath path
fileid <- write_path(opath, tblidx)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
Expand Down Expand Up @@ -595,9 +596,10 @@ result <- build_result_parcat3(PARCAT3sel = "General chemistry", tblid = tblid,

colwidth <- c(34, 27, 42, 47, 27, 42, 47, 27, 42, 49, 47, 47)

tt_to_tlgrtf(colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
nosplitin = list(cols = c(trtvar, "rrisk_header"))
)
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
nosplitin = list(cols = c(trtvar, "rrisk_header"))
)
16 changes: 9 additions & 7 deletions tests/testthat/source_code/tsflab01a.R
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Original file line number Diff line number Diff line change
Expand Up @@ -661,7 +661,8 @@ build_result_parcat3 <- function(
### add the proper abbreviation to the tblid, and add opath path
fileid <- write_path(opath, tblidx)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
Expand Down Expand Up @@ -721,9 +722,10 @@ result <- build_result_parcat3(PARCAT3sel = "General chemistry", tblid = tblid,

colwidth <- c(39, 29, 46, 47, 29, 46, 47, 29, 46, 48, 47, 49)

tt_to_tlgrtf(colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
nosplitin = list(cols = c(trtvar, "rrisk_header"))
)
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
orientation = "landscape",
nosplitin = list(cols = c(trtvar, "rrisk_header"))
)
2 changes: 1 addition & 1 deletion tests/testthat/source_code/tsflab02.R
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Original file line number Diff line number Diff line change
Expand Up @@ -588,4 +588,4 @@ result <- build_result_parcat3(PARCAT3sel = "General chemistry", tblid = tblid,

colwidth <- c(45, 21, 21, 21, 30, 30)

tt_to_tlgrtf(colwidths = colwidth, result, file = fileid, orientation = "landscape")
tt_to_tlgrtf(colwidths = colwidth, result, file = fileid, orientation = "landscape")
3 changes: 0 additions & 3 deletions tests/testthat/source_code/tsflab02a.R
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Original file line number Diff line number Diff line change
Expand Up @@ -640,6 +640,3 @@ result <- build_result_parcat3(
colwidth <- c(47, 21, 21, 19, 35, 35)

tt_to_tlgrtf(colwidths = colwidth, result, file = fileid, orientation = "landscape")



3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsflab02b.R
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Expand Up @@ -656,7 +656,8 @@ build_result_parcat3 <- function(
result <- build_result_parcat3(
PARCAT3sel = "General chemistry",
tblid = tblid,
save2rtf = FALSE)
save2rtf = FALSE
)

colwidth <- c(49, 19, 19, 19, 33, 33)

Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfvit01.R
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Original file line number Diff line number Diff line change
Expand Up @@ -352,7 +352,8 @@ result <- set_titles(result, titles)

colwidth <- c(54, 29, 54, 51, 29, 54, 47, 29, 54, 49, 51, 44)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
nosplitin = list(cols = c(trtvar, "rrisk_header")),
Expand Down
3 changes: 2 additions & 1 deletion tests/testthat/source_code/tsfvit01a.R
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Original file line number Diff line number Diff line change
Expand Up @@ -431,7 +431,8 @@ result <- set_titles(result, titles)

colwidth <- c(56, 29, 60, 59, 29, 60, 57, 29, 60, 57, 57, 57)

tt_to_tlgrtf(colwidths = colwidth,
tt_to_tlgrtf(
colwidths = colwidth,
result,
file = fileid,
nosplitin = list(cols = c(trtvar, "rrisk_header")),
Expand Down
15 changes: 9 additions & 6 deletions tests/testthat/source_code/tsidem01.R
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Original file line number Diff line number Diff line change
Expand Up @@ -232,8 +232,9 @@ lyt <- basic_table(
.stats = c("n", "mean_sd", "median", "range", "count_fraction"),
.labels = c("n" = "N", "range" = "Min, max"),
.formats = c(P1_precision,
n = jjcsformat_xx("xx"),
"count_fraction" = jjcsformat_count_fraction),
n = jjcsformat_xx("xx"),
"count_fraction" = jjcsformat_count_fraction
),
.indent_mods = c(
"n" = 0L,
"mean_sd" = 1L,
Expand Down Expand Up @@ -265,8 +266,9 @@ lyt <- basic_table(
.stats = c("n", "mean_sd", "median", "range", "count_fraction"),
.labels = c("n" = "N", "range" = "Min, max"),
.formats = c(P2a_precision,
n = jjcsformat_xx("xx"),
"count_fraction" = jjcsformat_count_fraction),
n = jjcsformat_xx("xx"),
"count_fraction" = jjcsformat_count_fraction
),
.indent_mods = c(
"n" = 0L,
"mean_sd" = 1L,
Expand All @@ -285,8 +287,9 @@ lyt <- basic_table(
.stats = c("n", "mean_sd", "median", "range", "count_fraction"),
.labels = c("n" = "N", "range" = "Min, max"),
.formats = c(P2b_precision,
n = jjcsformat_xx("xx"),
"count_fraction" = jjcsformat_count_fraction),
n = jjcsformat_xx("xx"),
"count_fraction" = jjcsformat_count_fraction
),
.indent_mods = c(
"n" = 0L,
"mean_sd" = 1L,
Expand Down
2 changes: 1 addition & 1 deletion tests/testthat/source_code/tsids01.R
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Expand Up @@ -84,7 +84,7 @@ lyt <- basic_table(
summarize_num_patients(
var = "USUBJID",
.stats = "unique",
.formats = c("unique" = jjcsformat_count_fraction),
.formats = c("unique" = "xx (xx.xx%)"),
.labels = c(unique = "Screening failures")
) %>%
count_occurrences(
Expand Down
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