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Prevent broken symlinks #97

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Prevent broken symlinks #97

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bac2742
resolve paths for working directory
wigasper Mar 2, 2024
cf2efa5
cleanup
wigasper Mar 2, 2024
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2 changes: 2 additions & 0 deletions bin/xtea
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Original file line number Diff line number Diff line change
Expand Up @@ -1269,6 +1269,8 @@ if __name__ == '__main__':
b_denovo=options.denovo
####

s_wfolder = os.path.abspath(s_wfolder)

if s_wfolder[-1]!="/":
s_wfolder+="/"
if os.path.exists(s_wfolder) == False:
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3 changes: 3 additions & 0 deletions bin/xtea_hg19
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Expand Up @@ -4,6 +4,7 @@ import os
from subprocess import *
from optparse import OptionParser
import ntpath

#import global_values
ILLUMINA="illumina"
X10="10X"
Expand Down Expand Up @@ -1173,6 +1174,8 @@ if __name__ == '__main__':
b_resume=options.resume
b_denovo = options.denovo

s_wfolder = os.path.abspath(s_wfolder)

if s_wfolder[-1]!="/":
s_wfolder+="/"
if os.path.exists(s_wfolder) == False:
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2 changes: 2 additions & 0 deletions bin/xtea_long
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Expand Up @@ -484,6 +484,8 @@ if __name__ == '__main__':
b_clean=options.clean
i_peak_win = options.win #maximum window size when try to cluster the breakpoints

s_wfolder = os.path.abspath(s_wfolder)

if s_wfolder[-1]!="/":
s_wfolder+="/"
if os.path.exists(s_wfolder) == False:
Expand Down