This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.

Long-read assembly workshop

Intermediate-Advanced shell for Bioinformatics

Intermediate R workshop material

A workshop to get you started with automating your genomic data analysis work in a High Performance Computing environment

A workshop to help you integrate Nextflow in your analysis workflows for reproducible and scalable pipelines.

Introduction to R

A two day workshop on reproducibility with Git and Quarto

Training workshop for microbial genome assembly using short sequencing reads.

Visualisation is more than just the code used to make a plot.

Outlier analysis workshop and research project developed under the AES ERC Networking Grant Scheme.

introduction to shell

Introduction to Software containerisation and some of the container platforms such as Apptainer , Docker

A workflow for analysing RNA-seq data, aimed at new users who want to understand the methods available.