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test-singlem.yml
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Update metapackage pixi Current Build #973: Pull request #290 synchronize by AroneyS
10m 59s update_metapackage_pixi
update_metapackage_pixi
10m 59s
Revise citation for SingleM prokaryotic_fraction Current Build #972: Commit e84b6cf pushed by wwood
10m 59s main
main
10m 59s
Update metapackage pixi Current Build #971: Pull request #290 synchronize by AroneyS
11m 5s update_metapackage_pixi
update_metapackage_pixi
11m 5s
pipe: Restore v0.19.0 orfm+mux way of analysing genomes, restoring pe… Current Build #970: Commit 3f90217 pushed by wwood
10m 57s main
main
10m 57s
pixi: Require orfm >= 2.1.1. Current Build #969: Commit 86b5e4a pushed by wwood
10m 55s main
main
10m 55s
data: Report DOI when download or acquire fails. Current Build #968: Commit 40efa37 pushed by wwood
10m 50s main
main
10m 50s
Multithreading + logging update Current Build #967: Pull request #295 synchronize by thepatientwait
10m 55s thepatientwait:logging_update
thepatientwait:logging_update
10m 55s
Multithreading + logging update Current Build #966: Pull request #295 synchronize by thepatientwait
10m 47s thepatientwait:logging_update
thepatientwait:logging_update
10m 47s
Multithreading + logging update Current Build #965: Pull request #295 synchronize by thepatientwait
1h 0m 19s thepatientwait:logging_update
thepatientwait:logging_update
1h 0m 19s
Multithreading + logging update Current Build #964: Pull request #295 synchronize by thepatientwait
43s thepatientwait:logging_update
thepatientwait:logging_update
43s
bug-fix: stop codons not registered when parsing alignments for metap… Current Build #963: Pull request #274 synchronize by thepatientwait
10m 51s thepatientwait:main
thepatientwait:main
10m 51s
Open packaged SQLite DBs in read-only immutable mode to avoid locking errors under SLURM Current Build #962: Pull request #294 opened by wwood
10m 45s codex/github-mention-sqlite-disk-i/o-error-when-running-under-s
codex/github-mention-sqlite-disk-i/o-error-when-running-under-s
10m 45s
Update metapackage pixi Current Build #961: Pull request #290 synchronize by AroneyS
10m 27s update_metapackage_pixi
update_metapackage_pixi
10m 27s
Update metapackage pixi Current Build #960: Pull request #290 synchronize by AroneyS
10m 49s update_metapackage_pixi
update_metapackage_pixi
10m 49s
Update metapackage pixi Current Build #959: Pull request #290 synchronize by AroneyS
11m 12s update_metapackage_pixi
update_metapackage_pixi
11m 12s
Update metapackage pixi Current Build #958: Pull request #290 synchronize by AroneyS
11m 5s update_metapackage_pixi
update_metapackage_pixi
11m 5s
Add fixes to update_metapackage_pixi Current Build #957: Pull request #292 opened by AroneyS
11m 8s main
main
11m 8s
Add full-file Polars schema inference for GTDB metadata Current Build #956: Commit 08f5a06 pushed by wwood
11m 0s main
main
11m 0s
singlem: Remove pandas in favour of polars. Current Build #955: Pull request #291 synchronize by wwood
11m 8s no_pandas
no_pandas
11m 8s
singlem: Remove pandas in favour of polars. Current Build #954: Pull request #291 opened by wwood
11m 2s no_pandas
no_pandas
11m 2s
SKILL: Add frontmatter. Current Build #953: Commit 898e974 pushed by wwood
13m 19s main
main
13m 19s
ci: reduce timeout to 1h, avoid duplicate runs on PRs, log test start Current Build #952: Commit 4fe1b6d pushed by wwood
12m 7s main
main
12m 7s
Update metapackage pixi Current Build #951: Pull request #290 synchronize by AroneyS
12m 37s update_metapackage_pixi
update_metapackage_pixi
12m 37s
update paths for R232 Current Build #950: Commit 50b71b7 pushed by AroneyS
13m 3s update_metapackage_pixi
update_metapackage_pixi
13m 3s
Fastq chunks fix Current Build #949: Pull request #289 synchronize by wwood
12m 7s fastq_chunks_fix
fastq_chunks_fix
12m 7s