Bring back the tolerance logic

[sophiedeziel]

Part of #221

Bringing back layer tolerance for z-axis movements and added configuration options for minimum layer threshold.

• Added back minLayerThreshold option to the lib options
• The option is passed to the Job
• The job uses it to instantiate a layer indexer with tolerance
• The layer indexer has a default tolerance of 0.05 (same as before)
• The indexer uses that tolerance to split the layers based on z changes

[sophiedeziel]

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• Bring back the tolerance logic #224 👈
• v3 temporary branch #225 : 5 other dependent PRs (#220 , #227 , #228 and 2 others)
• develop

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