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Comebin extremely slow / stuck in sleep (futex_wait_queue_me) during training, and missing comebin_res_bins output folder

Status: Open.

#48 In ziyewang/COMEBin;

· xdli009 opened on Feb 3, 2026

run_comebin.sh: can't open file 'main.py': [Errno 2] No such file or directory

Status: Open.

#46 In ziyewang/COMEBin;

· scunnac opened on Jan 19, 2026

BUG: HMMER Version Conflict Causes Crash with '--cut_tc' (Strict Error Handling)

Status: Open.

#44 In ziyewang/COMEBin;

· ystone1101 opened on Dec 1, 2025

noqa: F403 _ Something went wrong with running generating augmentation data. Exiting.

Status: Open.

#43 In ziyewang/COMEBin;

· Hedi65 opened on Nov 5, 2025

max() arg error

Status: Open.

#40 In ziyewang/COMEBin;

· AmaliT opened on Sep 17, 2025

Clarification on Large Intermediate Files in data_augmentation Output Folder

Status: Open.

#39 In ziyewang/COMEBin;

· tiantianlili opened on Jul 9, 2025

Dependenci conflicts installing with conda

Status: Open.

#38 In ziyewang/COMEBin;

· asaldivar93 opened on Jul 6, 2025

Available from pip?

Status: Open.

#36 In ziyewang/COMEBin;

· yqy6611 opened on Jun 14, 2025

“Generate features for the data” How to judge the current progress

Status: Open.

#35 In ziyewang/COMEBin;

· 1023011930 opened on May 14, 2025

Something went wrong with running training network

Status: Open.

#33 In ziyewang/COMEBin;

· heavennew opened on Mar 5, 2025

How to run gen_cov_files.sh and comebin using GPU?

Status: Open.

#32 In ziyewang/COMEBin;

· danieldavilaaleman opened on Feb 4, 2025

ValueError: max() arg is an empty sequence / UnboundLocalError: local variable 'logits' referenced before assignment

Status: Open.

#31 In ziyewang/COMEBin;

· Praneet-Prabhanjan opened on Jan 22, 2025