Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️
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Dec 10, 2024 - Nextflow
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pertussis
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Data, R scripts, tables and figures to reproduce the results in Berbers et al., 2021. Nature Communications.
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Nov 13, 2021 - R
This repository demonstrates how I used publicly available health data to clean, process, and analyze pertussis burden in infants under 1 year of age using statistical and trend analysis methods.
linear-regression public-health epidemiology sdi trend-analysis kruskal-wallis pertussis global-burden-of-disease joinpoint-regression
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Mar 11, 2026 - R
Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748
epidemiology vaccination pomp stochastic-models disease-transmission resurgence pertussis whooping-cough iterated-filtering age-structure mossong-matrix honeymoon vaccine-failure
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Mar 19, 2018 - C
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