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Persist the state dicts of both the backbone model and the fine-tuning head Release #129: Pull request #372 opened by bputzeys
21m 29s main
main
21m 29s
Fix save_model to include fine-tuning head weights Release #128: Pull request #371 synchronize by LiudengZhang
24m 42s LiudengZhang:fix/save-load-fine-tuning-head
LiudengZhang:fix/save-load-fine-tuning-head
24m 42s
Fix save_model to include fine-tuning head weights Release #127: Pull request #371 opened by LiudengZhang
16m 27s LiudengZhang:fix/save-load-fine-tuning-head
LiudengZhang:fix/save-load-fine-tuning-head
16m 27s
Gate FA2 Release #126: Pull request #370 opened by bputzeys
20m 46s main
main
20m 46s
Update transformers package Release #125: Pull request #368 opened by bputzeys
20m 34s main
main
20m 34s
fix config path Release #124: Pull request #364 opened by bputzeys
40m 1s main
main
40m 1s
Do not use remote code for nicheformer Release #123: Pull request #362 opened by bputzeys
26m 29s main
main
26m 29s
replaced AutoTokenizer/AutoModelForMaskedLM with Release #122: Pull request #360 opened by bputzeys
3m 21s use-python-files-directly
use-python-files-directly
3m 21s
update tf cache dir Release #121: Pull request #359 opened by bputzeys
19m 12s main
main
19m 12s
Nicheformer: ENSEMBL and attn maps (#354) Release #120: Pull request #355 opened by bputzeys
22m 22s main
main
22m 22s
Bump black from 26.1.0 to 26.3.1 Release #119: Pull request #351 opened by dependabot Bot
19m 13s dependabot/pip/black-26.3.1
dependabot/pip/black-26.3.1
19m 13s
allow adjusting helical cache Release #118: Pull request #350 opened by bputzeys
19m 5s main
main
19m 5s
Include Nicheformer Release #117: Pull request #347 opened by bputzeys
22m 58s main
main
22m 58s
Main Release #116: Pull request #344 synchronize by dmiv-helical
19m 11s main
main
19m 11s
Bring transcriptformer bug fix into release Release #115: Pull request #340 synchronize by bputzeys
40m 39s main
main
40m 39s
Bring transcriptformer bug fix into release Release #114: Pull request #340 opened by martinaoliver
49m 57s main
main
49m 57s
TF adapted to work with other non-homosapiens species (#333) Release #113: Pull request #335 opened by bputzeys
18m 49s main
main
18m 49s
add function to get all gene ranks from adata object using rve Release #112: Pull request #334 opened by sgraf2002
25m 29s gf_gene_ranks
gf_gene_ranks
25m 29s
TF adapted to work with other non-homosapiens species Release #111: Pull request #333 synchronize by martinaoliver
26m 1s tf_modified
tf_modified
26m 1s
TF adapted to work with other non-homosapiens species Release #110: Pull request #333 opened by martinaoliver
24m 31s tf_modified
tf_modified
24m 31s
updates to attention mechanism Release #109: Pull request #332 opened by bputzeys
27m 11s main
main
27m 11s
C2s attention returns genenames and optimisation (#329) Release #108: Pull request #330 synchronize by bputzeys
41m 51s main
main
41m 51s
C2s attention returns genenames and optimisation (#329) Release #107: Pull request #330 opened by maxiallard
19m 28s main
main
19m 28s
Return gene level attn Release #106: Pull request #328 opened by bputzeys
33m 25s main
main
33m 25s
keep process data sparse for c2s Release #104: Pull request #325 opened by bputzeys
21m 4s main
main
21m 4s